RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 ECE1P42892 770 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 ASMTP46597 345 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 SOX9P48436 509 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 CTCFP49711 727 aaPredicted RBP7.25□□□□□ -1.25
COPS3-216ENST00000579716 GTF2A1P52655 376 aaPredicted RBP7.25□□□□□ -1.25
COPS3-216ENST00000579716 NUCB2P80303 420 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 ZBTB16Q05516 673 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 PDE4BQ07343 736 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 SEMA3AQ14563 771 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 PPP1R7Q15435 360 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 OASLQ15646 514 aaKnown RBP7.25□□□□□ -1.25
COPS3-216ENST00000579716 ARHGAP29Q52LW3 1261 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 RNF219Q5W0B1 726 aaPredicted RBP7.25□□□□□ -1.25
COPS3-216ENST00000579716 KCNV1Q6PIU1 500 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 SYDE1Q6ZW31 735 aaPredicted RBP7.25□□□□□ -1.25
COPS3-216ENST00000579716 ERMP1Q7Z2K6 904 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 CCDC186Q7Z3E2 898 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 KDELC2Q7Z4H8 507 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 EPHX4Q8IUS5 362 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 TPH2Q8IWU9 490 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 LRRC56Q8IYG6 542 aaPredicted RBP7.25□□□□□ -1.25
COPS3-216ENST00000579716 TBC1D21Q8IYX1 336 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 CELF2-AS1Q8N7Q2 184 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 OR52K2Q8NGK3 314 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 RUFY2Q8WXA3 655 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 KIF1BPQ96EK5 621 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 RADILQ96JH8 1075 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 NOL10Q9BSC4 688 aaKnown RBP7.25□□□□□ -1.25
COPS3-216ENST00000579716 NCOR1P1Q9H4R4 102 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 VPS37BQ9H9H4 285 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 ATP13A1Q9HD20 1204 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 ST7Q9NRC1 585 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 CALCOCO1Q9P1Z2 691 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 GJD2Q9UKL4 321 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 KIF3AQ9Y496 699 aa7.25□□□□□ -1.25
COPS3-216ENST00000579716 A0A087WZG4 1122 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 MCF2LO15068 1137 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 SMAD7O15105 426 aaKnown RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 HOXC11O43248 304 aaPredicted RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 ZBTB43O43298 467 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 SLITRK5O94991 958 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 EYA4O95677 639 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 PARP1P09874 1014 aaKnown RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 HSPA1AP0DMV8 641 aaKnown RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 HSPA1BP0DMV9 641 aaKnown RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 ELF1P32519 619 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 MTHFRP42898 656 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 TNNT3P45378 269 aaPredicted RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 TM4SF4P48230 202 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 KIF11P52732 1056 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 IRX1P78414 480 aaPredicted RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 PPFIA1Q13136 1202 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 GRM3Q14832 879 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 PTPN21Q16825 1174 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 SHROOM1Q2M3G4 852 aaPredicted RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 SLC45A4Q5BKX6 768 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 ZBTB37Q5TC79 503 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 LILRA6Q6PI73 481 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 DSTYKQ6XUX3 929 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 CEP68Q76N32 757 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 SLC9B2Q86UD5 537 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 SIAH1Q8IUQ4 282 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 ZSWIM2Q8NEG5 633 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 CCDC148Q8NFR7 591 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 PPP1R14CQ8TAE6 165 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 FBXO30Q8TB52 745 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 FERMT2Q96AC1 680 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 HSPA12BQ96MM6 686 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 SLC26A8Q96RN1 970 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 CAPS2Q9BXY5 557 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 CARS2Q9HA77 564 aaKnown RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 ETAA1Q9NY74 926 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 IL20Q9NYY1 176 aa7.24□□□□□ -1.25
COPS3-216ENST00000579716 SOS1Q07889 1333 aaPredicted RBP7.24□□□□□ -1.25
COPS3-216ENST00000579716 ABCC9O60706 1549 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 CCDC69A6NI79 296 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 GSG1L2A8MUP6 293 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 B4DLN1 442 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 NCAM2O15394 837 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 ZBTB14O43829 449 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 TSC22D2O75157 780 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 TMEM127O75204 238 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 USP2O75604 605 aaPredicted RBP7.23□□□□□ -1.25
COPS3-216ENST00000579716 FGFR1OPO95684 399 aaKnown RBP7.23□□□□□ -1.25
COPS3-216ENST00000579716 DNTTP04053 509 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 RHOXF2BP0C7M4 288 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 ZKSCAN1P17029 563 aaPredicted RBP7.23□□□□□ -1.25
COPS3-216ENST00000579716 HOXC12P31275 282 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 SKIV2L2P42285 1042 aaKnown RBP7.23□□□□□ -1.25
COPS3-216ENST00000579716 MATR3P43243 847 aaKnown RBP eCLIP7.23□□□□□ -1.25
COPS3-216ENST00000579716 AFMP43652 599 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 PHKA1P46020 1223 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 SEPHS1P49903 392 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 RRP1P56182 461 aaKnown RBP7.23□□□□□ -1.25
COPS3-216ENST00000579716 UBXN1Q04323 297 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 PTPN11Q06124 597 aaPredicted RBP7.23□□□□□ -1.25
COPS3-216ENST00000579716 VWA3BQ502W6 1294 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 CAVIN4Q5BKX8 364 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 MCTP2Q6DN12 878 aa7.23□□□□□ -1.25
COPS3-216ENST00000579716 MFSD6Q6ZSS7 791 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms