RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 PDIA5Q14554 519 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 COL19A1Q14993 1142 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 PAN2Q504Q3 1202 aaKnown RBP11.31□□□□□ -0.6
SS18-207ENST00000577636 HERC4Q5GLZ8 1057 aaPredicted RBP11.31□□□□□ -0.6
SS18-207ENST00000577636 KRT79Q5XKE5 535 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 METTL7BQ6UX53 244 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 RUFY4Q6ZNE9 571 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 RBM23Q86U06 439 aaKnown RBP11.31□□□□□ -0.6
SS18-207ENST00000577636 CABP7Q86V35 215 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 PRSS33Q8NF86 280 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 LMBR1Q8WVP7 490 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 EDAQ92838 391 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 CCDC47Q96A33 483 aaKnown RBP11.31□□□□□ -0.6
SS18-207ENST00000577636 CCSER1Q9C0I3 900 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 LRRC27Q9C0I9 530 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 CBX8Q9HC52 389 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 RMND1Q9NWS8 449 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 TUBE1Q9UJT0 475 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 RWDD3Q9Y3V2 267 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 ADGRA3Q8IWK6 1321 aa11.31□□□□□ -0.6
SS18-207ENST00000577636 TMEM221A6NGB7 291 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 M0R296 226 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 BIN1O00499 593 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 TBX3O15119 743 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 SLC26A4O43511 780 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 ACTN4O43707 911 aaKnown RBP11.3□□□□□ -0.6
SS18-207ENST00000577636 HOXC8P31273 242 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 SREBF1P36956 1147 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 TECP42680 631 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 IGBP1P78318 339 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 MRPS9P82933 396 aaKnown RBP11.3□□□□□ -0.6
SS18-207ENST00000577636 AMPD3Q01432 767 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 ADAM15Q13444 863 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 FAM26DQ5JW98 314 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 ADGRD2Q7Z7M1 963 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 RSPH3Q86UC2 560 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 SUGP1Q8IWZ8 645 aaKnown RBP11.3□□□□□ -0.6
SS18-207ENST00000577636 ERMNQ8TAM6 284 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 DNAJB3Q8WWF6 145 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 PPP2R3CQ969Q6 453 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 BPIFA3Q9BQP9 254 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 GTPBP4Q9BZE4 634 aaKnown RBP11.3□□□□□ -0.6
SS18-207ENST00000577636 TMEM60Q9H2L4 133 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 DISC1Q9NRI5 854 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 PCDHA12Q9UN75 941 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 PLAGL2Q9UPG8 496 aa11.3□□□□□ -0.6
SS18-207ENST00000577636 BAZ2BQ9UIF8 2168 aaKnown RBP11.29□□□□□ -0.6
SS18-207ENST00000577636 CYP3A7-CYP3A51PA0A087WV96 503 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 SPATA31C2B4DYI2 1134 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 PTMAP06454 111 aaKnown RBP11.29□□□□□ -0.6
SS18-207ENST00000577636 CYP3A7P24462 503 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 DNAJB1P25685 340 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 ICAM3P32942 547 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 AFMP43652 599 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 NRIP1P48552 1158 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 PTPN5P54829 565 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 GHRHRQ02643 423 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 SEMA3FQ13275 785 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 LPIN1Q14693 890 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 IL17AQ16552 155 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 Q4G0T1 1027 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 CT47A1Q5JQC4 288 aaPredicted RBP11.29□□□□□ -0.6
SS18-207ENST00000577636 TRIM67Q6ZTA4 783 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 USP49Q70CQ1 688 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 IGSF22Q8N9C0 903 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 MLKLQ8NB16 471 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 MICAL1Q8TDZ2 1067 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 POF1BQ8WVV4 589 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 CLP1Q92989 425 aaKnown RBP11.29□□□□□ -0.6
SS18-207ENST00000577636 PAGE5Q96GU1 130 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 RPGRIP1Q96KN7 1286 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 SNX27Q96L92 541 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 FAM20AQ96MK3 541 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 GSDMAQ96QA5 445 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 MTMR9Q96QG7 549 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 TTC12Q9H892 705 aaPredicted RBP11.29□□□□□ -0.6
SS18-207ENST00000577636 FAM86C1Q9NVL1 165 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 PCDHA5Q9Y5H7 936 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 CDY2AQ9Y6F7 541 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 MRPL42Q9Y6G3 142 aaKnown RBP11.29□□□□□ -0.6
SS18-207ENST00000577636 NRCAMQ92823 1304 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 KDM3AQ9Y4C1 1321 aa11.29□□□□□ -0.6
SS18-207ENST00000577636 SLC37A4O43826 429 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 DGKIO75912 1065 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 CYP3A4P08684 503 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 LINC00271P0C7V0 271 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 CD52P31358 61 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 TCF7P36402 384 aaPredicted RBP11.28□□□□□ -0.6
SS18-207ENST00000577636 ADAM17P78536 824 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 ZXDAP98168 799 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 MGAT3Q09327 533 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 PPFIA1Q13136 1202 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 CAMK1Q14012 370 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 KARSQ15046 597 aaKnown RBP11.28□□□□□ -0.6
SS18-207ENST00000577636 PRR16Q569H4 304 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 SPOUT1Q5T280 376 aaKnown RBP11.28□□□□□ -0.6
SS18-207ENST00000577636 NT5DC1Q5TFE4 455 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 HAUS3Q68CZ6 603 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 NLRX1Q86UT6 975 aa11.28□□□□□ -0.6
SS18-207ENST00000577636 LUZP1Q86V48 1076 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms