RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 PLAGL2Q9UPG8 496 aa17.32■□□□□ 0.36
SF3B3-215ENST00000577085 NCK2O43639 380 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 SLITRK3O94933 977 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 SKIP12755 728 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 BMP1P13497 986 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 EMC2Q15006 297 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 CSPP1Q1MSJ5 1256 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 ECHDC2Q86YB7 292 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 KSR1Q8IVT5 923 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 THNSL1Q8IYQ7 743 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 PRPF31Q8WWY3 499 aaKnown RBP17.31■□□□□ 0.36
SF3B3-215ENST00000577085 MTRQ99707 1265 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 TMEM117Q9H0C3 514 aa17.31■□□□□ 0.36
SF3B3-215ENST00000577085 PIN4Q9Y237 131 aaKnown RBP17.31■□□□□ 0.36
SF3B3-215ENST00000577085 A0A0U1RQF3 1178 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 EOMESO95936 686 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 LAG3P18627 525 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 ORC2Q13416 577 aaPredicted RBP17.3■□□□□ 0.36
SF3B3-215ENST00000577085 ZNF174Q15697 407 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 NOSTRINQ8IVI9 506 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 LRRC43Q8N309 656 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 ZNF579Q8NAF0 562 aaKnown RBP17.3■□□□□ 0.36
SF3B3-215ENST00000577085 ERMNQ8TAM6 284 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 MICAL1Q8TDZ2 1067 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 MTMR9Q96QG7 549 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 DHX33Q9H6R0 707 aaKnown RBP17.3■□□□□ 0.36
SF3B3-215ENST00000577085 TYW1Q9NV66 732 aaKnown RBP17.3■□□□□ 0.36
SF3B3-215ENST00000577085 CLDND1Q9NY35 253 aa17.3■□□□□ 0.36
SF3B3-215ENST00000577085 POTEMA6NI47 508 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 WNT7AO00755 349 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 ASAP2O43150 1006 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 ITGB1P05556 798 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 OR52Z1P0C646 297 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 TECP42680 631 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 LAMTOR4Q0VGL1 99 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 TFDP1Q14186 410 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 TTC38Q5R3I4 469 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 POF1BQ8WVV4 589 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 PABPC5Q96DU9 382 aaKnown RBP17.29■□□□□ 0.36
SF3B3-215ENST00000577085 HSD17B14Q9BPX1 270 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 IGFLR1Q9H665 355 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 ANKEF1Q9NU02 776 aa17.29■□□□□ 0.36
SF3B3-215ENST00000577085 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.28■□□□□ 0.36
SF3B3-215ENST00000577085 ZBTB39O15060 712 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 DGAT1O75907 488 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 ERLIN2O94905 339 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 LYPLA2O95372 231 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 PHKA2P46019 1235 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 TRAPPC10P48553 1259 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 RAB27AP51159 221 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 NCBP1Q09161 790 aaKnown RBP17.28■□□□□ 0.36
SF3B3-215ENST00000577085 MXD4Q14582 209 aaPredicted RBP17.28■□□□□ 0.36
SF3B3-215ENST00000577085 PUS10Q3MIT2 529 aaKnown RBP17.28■□□□□ 0.36
SF3B3-215ENST00000577085 LEXMQ3ZCV2 418 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 SRGAP1Q7Z6B7 1085 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 RNF149Q8NC42 400 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 SPPL3Q8TCT6 385 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 MRPL9Q9BYD2 267 aaKnown RBP17.28■□□□□ 0.36
SF3B3-215ENST00000577085 TMEM60Q9H2L4 133 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 FAM50BQ9Y247 325 aa17.28■□□□□ 0.36
SF3B3-215ENST00000577085 FGF18O76093 207 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 MCM2P49736 904 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 UBE3AQ05086 875 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 MCTP1Q6DN14 999 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 FERMT3Q86UX7 667 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 COLGALT1Q8NBJ5 622 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 HELQQ8TDG4 1101 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 PIGOQ8TEQ8 1089 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 ZNF558Q96NG5 402 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 NECAB3Q96P71 396 aaPredicted RBP17.27■□□□□ 0.36
SF3B3-215ENST00000577085 CASD1Q96PB1 797 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 IFT122Q9HBG6 1241 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 TUFT1Q9NNX1 390 aa17.27■□□□□ 0.36
SF3B3-215ENST00000577085 PUF60Q9UHX1 559 aaKnown RBP17.27■□□□□ 0.36
SF3B3-215ENST00000577085 H3BQ06 376 aaPredicted RBP17.26■□□□□ 0.35
SF3B3-215ENST00000577085 PPM1AP35813 382 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 KRT17Q04695 432 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 HAUS3Q68CZ6 603 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 PTCRAQ6ISU1 281 aaPredicted RBP17.26■□□□□ 0.35
SF3B3-215ENST00000577085 GLB1LQ6UWU2 654 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 RSPH1Q8WYR4 309 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 PGBD4Q96DM1 585 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 TLR9Q9NR96 1032 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 AGPAT5Q9NUQ2 364 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 FAM105AQ9NUU6 356 aa17.26■□□□□ 0.35
SF3B3-215ENST00000577085 H3BQV1 296 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 INO80B-WBP1J3KQ70 363 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 USO1O60763 962 aaKnown RBP17.25■□□□□ 0.35
SF3B3-215ENST00000577085 XRCC6P12956 609 aaKnown RBP eCLIP17.25■□□□□ 0.35
SF3B3-215ENST00000577085 DNAJB1P25685 340 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 ALDH7A1P49419 539 aaKnown RBP17.25■□□□□ 0.35
SF3B3-215ENST00000577085 RARRES1P49788 294 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 HYAL1Q12794 435 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 PCBP1Q15365 356 aaKnown RBP eCLIP17.25■□□□□ 0.35
SF3B3-215ENST00000577085 LONRF3Q496Y0 759 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 CLLU1OSQ5K130 101 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 TMX3Q96JJ7 454 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 NACC1Q96RE7 527 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 TRAIPQ9BWF2 469 aa17.25■□□□□ 0.35
SF3B3-215ENST00000577085 RAB34Q9BZG1 259 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms