RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ALCAMQ13740 583 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 MUM1L1Q5H9M0 696 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 CIAPIN1Q6FI81 312 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 SLFN11Q7Z7L1 901 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 SAMD3Q8N6K7 520 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 LNX1Q8TBB1 728 aaPredicted RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 U2AF1L4Q8WU68 220 aaKnown RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 LMBR1Q8WVP7 490 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 RIN2Q8WYP3 895 aaPredicted RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 CAVIN3Q969G5 261 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 PBKQ96KB5 322 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 SYT11Q9BT88 431 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 TMEM206Q9H813 350 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 RAVER2Q9HCJ3 691 aaKnown RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 TBC1D22BQ9NU19 505 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 APEX2Q9UBZ4 518 aa10.97□□□□□ -0.65
VPS53-220ENST00000576149 SCAF8Q9UPN6 1271 aaKnown RBP10.97□□□□□ -0.65
VPS53-220ENST00000576149 LMNB1P20700 586 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 MYL7Q01449 175 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 PLS1Q14651 629 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 MAEAQ7L5Y9 396 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 FMNL3Q8IVF7 1028 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 LMO3Q8TAP4 145 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 KRT12Q99456 494 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 GOLPH3Q9H4A6 298 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 GINM1Q9NU53 330 aa10.96□□□□□ -0.65
VPS53-220ENST00000576149 HEXIM1O94992 359 aaKnown RBP10.96□□□□□ -0.66
VPS53-220ENST00000576149 CCDC172P0C7W6 258 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 PLS3P13797 630 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 CAPN2P17655 700 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 ACTN2P35609 894 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 GALCP54803 685 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 NNTQ13423 1086 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 DGKZQ13574 1117 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 GLYCTKQ8IVS8 523 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 C12orf56Q8IXR9 622 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 RDH13Q8NBN7 331 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 ACTRT1Q8TDG2 376 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 ACCSQ96QU6 501 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 TAAR1Q96RJ0 339 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 STXBP5LQ9Y2K9 1186 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 SAMM50Q9Y512 469 aa10.96□□□□□ -0.66
VPS53-220ENST00000576149 CTNND1O60716 968 aaKnown RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 RFX1P22670 979 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 YWHABP31946 246 aaKnown RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 CARSP49589 748 aaKnown RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 RNASE9P60153 205 aaKnown RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 RPS6P62753 249 aaKnown RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 TNNC1P63316 161 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 GUCY2DQ02846 1103 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 SPP2Q13103 211 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 TNFAIP1Q13829 316 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 PGM5Q15124 567 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 ZSCAN26Q16670 478 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 PHLDB3Q6NSJ2 640 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 INTS8Q75QN2 995 aaKnown RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 SYCE1Q8N0S2 351 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 GOLGA6L1Q8N7Z2 621 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 AFAP1L1Q8TED9 768 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 SCFD2Q8WU76 684 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 ST6GALNAC4Q9H4F1 302 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 EPB41L5Q9HCM4 733 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 HOMER2Q9NSB8 354 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 SUCLA2Q9P2R7 463 aaPredicted RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 PPP1R9AQ9ULJ8 1098 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 TMEM253P0C7T8 217 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 KRT13P13646 458 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 EIF2AK2P19525 551 aaKnown RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 ZNF280AP59817 542 aaPredicted RBP10.95□□□□□ -0.66
VPS53-220ENST00000576149 GTF2BQ00403 316 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 PAK2Q13177 524 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 ALS2CLQ60I27 953 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 PEX26Q7Z412 305 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 C4orf19Q8IY42 314 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 METTL13Q8N6R0 699 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 SH3GL2Q99962 352 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 TIPINQ9BVW5 301 aa10.95□□□□□ -0.66
VPS53-220ENST00000576149 NCANO14594 1321 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 ASTN2O75129 1339 aaPredicted RBP10.94□□□□□ -0.66
VPS53-220ENST00000576149 ZSCAN5CA6NGD5 496 aaPredicted RBP10.94□□□□□ -0.66
VPS53-220ENST00000576149 TISP43B9A030 160 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 P4HA2O15460 535 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 RAD51CO43502 376 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 CEP104O60308 925 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 RPS6KA5O75582 802 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 EGFRP00533 1210 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 VCAM1P19320 739 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 DLG4P78352 724 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 KIF22Q14807 665 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.94□□□□□ -0.66
VPS53-220ENST00000576149 NT5DC3Q86UY8 548 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 TSEN2Q8NCE0 465 aaKnown RBP10.94□□□□□ -0.66
VPS53-220ENST00000576149 JDP2Q8WYK2 163 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 CALR3Q96L12 384 aaKnown RBP10.94□□□□□ -0.66
VPS53-220ENST00000576149 CBWD1Q9BRT8 395 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 PCIF1Q9H4Z3 704 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 PIM2Q9P1W9 311 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 PNMA2Q9UL42 364 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 NFU1Q9UMS0 254 aa10.94□□□□□ -0.66
VPS53-220ENST00000576149 MYH11P35749 1972 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms