RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 IGFBP4P22692 258 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 NEK4P51957 841 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 DEFB103AP81534 67 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 NCOA4Q13772 614 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 ZNF746Q6NUN9 644 aaPredicted RBP8.41□□□□□ -1.06
NUP88-205ENST00000572809 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.41□□□□□ -1.06
NUP88-205ENST00000572809 TMCO2Q7Z6W1 182 aaPredicted RBP8.41□□□□□ -1.06
NUP88-205ENST00000572809 FAM177A1Q8N128 213 aaPredicted RBP8.41□□□□□ -1.06
NUP88-205ENST00000572809 DAGLBQ8NCG7 672 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 TBCKQ8TEA7 893 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 FOXJ1Q92949 421 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 IL17RAQ96F46 866 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 AIFM3Q96NN9 605 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 RAD9AQ99638 391 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 GZF1Q9H116 711 aaPredicted RBP8.41□□□□□ -1.06
NUP88-205ENST00000572809 TCEAL9Q9UHQ7 104 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 DNMT3LQ9UJW3 386 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 PCDHA10Q9Y5I2 948 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 KAT6AQ92794 2004 aa8.41□□□□□ -1.06
NUP88-205ENST00000572809 TANC1Q9C0D5 1861 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 SMIM35A0A1B0GVV1 85 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 M0R2N6 131 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 MSH4O15457 936 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 CTDNEP1O95476 244 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 PSAPP07602 524 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 KLRC1P26715 233 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 TAP1Q03518 808 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 MGAT3Q09327 533 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 ADGRE1Q14246 886 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 ME3Q16798 604 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 Q4G0T1 1027 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 ZNF484Q5JVG2 852 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 IER5Q5VY09 327 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 FAM117BQ6P1L5 589 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 MTHFD1LQ6UB35 978 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 CCDC60Q8IWA6 550 aaPredicted RBP8.4□□□□□ -1.06
NUP88-205ENST00000572809 CKAP2LQ8IYA6 745 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 SMAP1Q8IYB5 467 aaPredicted RBP8.4□□□□□ -1.06
NUP88-205ENST00000572809 LINC00528Q8N1L1 170 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 NME8Q8N427 588 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 FAM200AQ8TCP9 573 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 TRAPPC12Q8WVT3 735 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 PPM1EQ8WY54 764 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 WASF1Q92558 559 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 APBB2Q92870 758 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 LENG9Q96B70 501 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 ZBTB10Q96DT7 871 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 RIT2Q99578 217 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 PHF20Q9BVI0 1012 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 IFIH1Q9BYX4 1025 aaKnown RBP8.4□□□□□ -1.06
NUP88-205ENST00000572809 FAM49AQ9H0Q0 323 aaPredicted RBP8.4□□□□□ -1.06
NUP88-205ENST00000572809 CERS4Q9HA82 394 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 CDV3Q9UKY7 258 aaKnown RBP8.4□□□□□ -1.06
NUP88-205ENST00000572809 NOVA2Q9UNW9 492 aaKnown RBP8.4□□□□□ -1.06
NUP88-205ENST00000572809 KCNJ14Q9UNX9 436 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 SAMM50Q9Y512 469 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 INSL6Q9Y581 213 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 PCDHA2Q9Y5H9 948 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 CDY2AQ9Y6F7 541 aa8.4□□□□□ -1.06
NUP88-205ENST00000572809 GBF1Q92538 1859 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 STK36Q9NRP7 1315 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 CYP3A7-CYP3A51PA0A087WV96 503 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 RFXAPO00287 272 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 ENPP3O14638 875 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 DTNBO60941 627 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 GHRP10912 638 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 FDPSP14324 419 aaKnown RBP8.39□□□□□ -1.07
NUP88-205ENST00000572809 ATP4AP20648 1035 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 CYP3A7P24462 503 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 ATP1A2P50993 1020 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 MRPS6P82932 125 aaKnown RBP8.39□□□□□ -1.07
NUP88-205ENST00000572809 NR5A1Q13285 461 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 LPIN1Q14693 890 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 NONOQ15233 471 aaKnown RBP eCLIP8.39□□□□□ -1.07
NUP88-205ENST00000572809 NPY5RQ15761 445 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 CCDC85BQ15834 202 aaPredicted RBP8.39□□□□□ -1.07
NUP88-205ENST00000572809 FBXO47Q5MNV8 452 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 MOXD1Q6UVY6 613 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 TRMT1LQ7Z2T5 733 aaKnown RBP8.39□□□□□ -1.07
NUP88-205ENST00000572809 KRT25Q7Z3Z0 450 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.39□□□□□ -1.07
NUP88-205ENST00000572809 MYOCDQ8IZQ8 938 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 NECAB1Q8N987 351 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 USP38Q8NB14 1042 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 ATP8B4Q8TF62 1192 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 ARNTL2Q8WYA1 636 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 SLC5A5Q92911 643 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 TOP1MTQ969P6 601 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 TEKT3Q9BXF9 490 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 COL25A1Q9BXS0 654 aaPredicted RBP8.39□□□□□ -1.07
NUP88-205ENST00000572809 CELF4Q9BZC1 486 aaKnown RBP8.39□□□□□ -1.07
NUP88-205ENST00000572809 DISC1Q9NRI5 854 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 NRBP2Q9NSY0 501 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 ORC3Q9UBD5 711 aaPredicted RBP8.39□□□□□ -1.07
NUP88-205ENST00000572809 GABBR1Q9UBS5 961 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 SQORQ9Y6N5 450 aa8.39□□□□□ -1.07
NUP88-205ENST00000572809 COL1A2P08123 1366 aa8.38□□□□□ -1.07
NUP88-205ENST00000572809 LAMA2P24043 3122 aaKnown RBP8.38□□□□□ -1.07
NUP88-205ENST00000572809 CCDC194A0A1B0GVG4 234 aa8.38□□□□□ -1.07
NUP88-205ENST00000572809 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms