RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, human

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CIITA-208	ENST00000572665	RNF41	Q9H4P4	317 aa	Predicted RBP	10.85	□□□□□ -0.67
CIITA-208	ENST00000572665	A1CF	Q9NQ94	594 aa	Known RBP	10.85	□□□□□ -0.67
CIITA-208	ENST00000572665	NOP53	Q9NZM5	478 aa	Known RBP	10.85	□□□□□ -0.67
CIITA-208	ENST00000572665	CCPG1	Q9ULG6	757 aa		10.85	□□□□□ -0.67
CIITA-208	ENST00000572665	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
CIITA-208	ENST00000572665	ZMYM6	O95789	1325 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	CNTNAP5	Q8WYK1	1306 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	ARVCF	O00192	962 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	ICAM1	P05362	532 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	TOP1	P11387	765 aa	Known RBP	10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	PDE1A	P54750	535 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	NKX3-2	P78367	333 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	PTPN11	Q06124	597 aa	Predicted RBP	10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	CCDC178	Q5BJE1	867 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	C9orf50	Q5SZB4	431 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	IQSEC1	Q6DN90	963 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	CCSAP	Q6IQ19	270 aa	Predicted RBP	10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	PSRC1	Q6PGN9	363 aa	Predicted RBP	10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	KCTD1	Q719H9	257 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	RASGRP4	Q8TDF6	673 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	GPBAR1	Q8TDU6	330 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	UBASH3B	Q8TF42	649 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	GATAD2B	Q8WXI9	593 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	LENG1	Q96BZ8	264 aa	Predicted RBP	10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	TTC14	Q96N46	770 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	VTA1	Q9NP79	307 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	TCP11L1	Q9NUJ3	509 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665		Q9Y3F1	56 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	SALL3	Q9BXA9	1300 aa		10.84	□□□□□ -0.67
CIITA-208	ENST00000572665	FAM221A	A4D161	298 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	DLGAP3	O95886	979 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	FGR	P09769	529 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	CDK7	P50613	346 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	CNTN2	Q02246	1040 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	BRDT	Q58F21	947 aa	Predicted RBP	10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	RRP12	Q5JTH9	1297 aa	Known RBP	10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	NSMF	Q6X4W1	530 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	MFSD6	Q6ZSS7	791 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	TLK2	Q86UE8	772 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	BEND7	Q8N7W2	519 aa	Predicted RBP	10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	GUCD1	Q96NT3	240 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	MAF1	Q9H063	256 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	SEMA6B	Q9H3T3	888 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	RWDD1	Q9H446	243 aa	Predicted RBP	10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	IL17RB	Q9NRM6	502 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	UBP1	Q9NZI7	540 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	ZNF536	O15090	1300 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	RAD50	Q92878	1312 aa		10.83	□□□□□ -0.68
CIITA-208	ENST00000572665	HIP1	O00291	1037 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	ZNF862	O60290	1169 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	WISP1	O95388	367 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	FGA	P02671	866 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	FOSL2	P15408	326 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	NOV	P48745	357 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	FSCN1	Q16658	493 aa	Known RBP	10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	DUOXA2	Q1HG44	320 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	PRRT3	Q5FWE3	981 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	BTNL9	Q6UXG8	535 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	SREK1	Q8WXA9	508 aa	Known RBP	10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	ESR2	Q92731	530 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	FGD4	Q96M96	766 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	CDX2	Q99626	313 aa	Predicted RBP	10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	RANBP17	Q9H2T7	1088 aa	Known RBP	10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	CYP39A1	Q9NYL5	469 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	TBX21	Q9UL17	535 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	CCDC171	Q6TFL3	1326 aa		10.82	□□□□□ -0.68
CIITA-208	ENST00000572665	DNAH12	Q6ZR08	3092 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	LAMA3	Q16787	3333 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	MYADML2	A6NDP7	307 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	CILP	O75339	1184 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	HSPD1	P10809	573 aa	Known RBP	10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	ITGB8	P26012	769 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	CPT1A	P50416	773 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	ITGA7	Q13683	1181 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	AKNAD1	Q5T1N1	836 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	GPATCH4	Q5T3I0	446 aa	Known RBP	10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	SYDE2	Q5VT97	1194 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	KIAA1211	Q6ZU35	1233 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	IQCA1	Q86XH1	822 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	FAM126B	Q8IXS8	530 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	MAFA	Q8NHW3	353 aa	Predicted RBP	10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	RILPL2	Q969X0	211 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	SPATA32	Q96LK8	384 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	CRBN	Q96SW2	442 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	TMEM47	Q9BQJ4	181 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	LRRC3	Q9BY71	257 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	KATNBL1	Q9H079	304 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	LRRC37A2	A6NM11	1700 aa		10.81	□□□□□ -0.68
CIITA-208	ENST00000572665	PTPDC1	A2A3K4	754 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	ZNF213	O14771	459 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	NKRF	O15226	690 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	DYNC1LI2	O43237	492 aa	Predicted RBP	10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	NMT2	O60551	498 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	SUPT20HL2	P0C7V6	817 aa		10.8	□□□□□ -0.68
CIITA-208	ENST00000572665	SELP	P16109	830 aa		10.8	□□□□□ -0.68

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