RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 RHPN2Q8IUC4 686 aa20.32■□□□□ 0.84
CHD3-214ENST00000572579 ADHFE1Q8IWW8 467 aa20.32■□□□□ 0.84
CHD3-214ENST00000572579 RNF169Q8NCN4 708 aa20.32■□□□□ 0.84
CHD3-214ENST00000572579 GCOM2Q9BZD3 368 aaPredicted RBP20.32■□□□□ 0.84
CHD3-214ENST00000572579 CD207Q9UJ71 328 aa20.32■□□□□ 0.84
CHD3-214ENST00000572579 BARX2Q9UMQ3 279 aaPredicted RBP20.32■□□□□ 0.84
CHD3-214ENST00000572579 FNDC1Q4ZHG4 1894 aaPredicted RBP20.32■□□□□ 0.84
CHD3-214ENST00000572579 WDR81Q562E7 1941 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 BTBD18B2RXH4 712 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 TBX3O15119 743 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 P4HBP07237 508 aaKnown RBP20.31■□□□□ 0.84
CHD3-214ENST00000572579 GCFC2P16383 781 aaKnown RBP20.31■□□□□ 0.84
CHD3-214ENST00000572579 PLCB3Q01970 1234 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 UBE3AQ05086 875 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 SMAD4Q13485 552 aaKnown RBP20.31■□□□□ 0.84
CHD3-214ENST00000572579 KCNC3Q14003 757 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 ANKRD1Q15327 319 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 EPHA7Q15375 998 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 KCNT2Q6UVM3 1135 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 THNSL1Q8IYQ7 743 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 HELQQ8TDG4 1101 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 TMEM143Q96AN5 459 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 SCLT1Q96NL6 688 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 DHX33Q9H6R0 707 aaKnown RBP20.31■□□□□ 0.84
CHD3-214ENST00000572579 TLE6Q9H808 572 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 MINDY3Q9H8M7 445 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 TLR9Q9NR96 1032 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 AAASQ9NRG9 546 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 TRIOO75962 3097 aa20.31■□□□□ 0.84
CHD3-214ENST00000572579 HIDE1A8MVS5 230 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 SLITRK3O94933 977 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 LAG3P18627 525 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 PHKA2P46019 1235 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 NEK4P51957 841 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 FOSBP53539 338 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 COASYQ13057 564 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 CTTNQ14247 550 aaKnown RBP20.3■□□□□ 0.84
CHD3-214ENST00000572579 DUSP6Q16828 381 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 LONRF3Q496Y0 759 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 TMEM31Q5JXX7 168 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 SMRP1Q8NCR6 262 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 MICAL1Q8TDZ2 1067 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 PRPF31Q8WWY3 499 aaKnown RBP20.3■□□□□ 0.84
CHD3-214ENST00000572579 MRPS27Q92552 414 aaKnown RBP20.3■□□□□ 0.84
CHD3-214ENST00000572579 LPPQ93052 612 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 DYDC2Q96IM9 177 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 TRAIPQ9BWF2 469 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 CHST12Q9NRB3 414 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 RNF216Q9NWF9 866 aaPredicted RBP20.3■□□□□ 0.84
CHD3-214ENST00000572579 PRKAG3Q9UGI9 489 aa20.3■□□□□ 0.84
CHD3-214ENST00000572579 EOMESO95936 686 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 XBP1P17861 261 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 HOXA11P31270 313 aaPredicted RBP20.29■□□□□ 0.84
CHD3-214ENST00000572579 KRT2P35908 639 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 NDUFV1P49821 464 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 CDC42EP1Q00587 391 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 ZNF410Q86VK4 478 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 TMEM173Q86WV6 379 aaPredicted RBP20.29■□□□□ 0.84
CHD3-214ENST00000572579 C4orf19Q8IY42 314 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 CEP170P1Q96L14 293 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 NLRP4Q96MN2 994 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 HSD17B14Q9BPX1 270 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 LXNQ9BS40 222 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 BMP2KQ9NSY1 1161 aaPredicted RBP20.29■□□□□ 0.84
CHD3-214ENST00000572579 LZTS1Q9Y250 596 aa20.29■□□□□ 0.84
CHD3-214ENST00000572579 A0A087WWV3 80 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 B4GALT3O60512 393 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 DNM2P50570 870 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 AFF1P51825 1210 aaKnown RBP20.28■□□□□ 0.84
CHD3-214ENST00000572579 CYP4A11Q02928 519 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 PLPP4Q5VZY2 271 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 NCAPH2Q6IBW4 605 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 SLC39A11Q8N1S5 342 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 XPNPEP1Q9NQW7 623 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 PLXNA4Q9HCM2 1894 aa20.28■□□□□ 0.84
CHD3-214ENST00000572579 NT5C1B-RDH14C9J2C7 533 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 HOXA2O43364 376 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 SRGAP2CP0DJJ0 459 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 YWHABP31946 246 aaKnown RBP20.27■□□□□ 0.84
CHD3-214ENST00000572579 CSPP1Q1MSJ5 1256 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 UBXN11Q5T124 520 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 LRRC43Q8N309 656 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 WASF1Q92558 559 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 ZNF558Q96NG5 402 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 MTMR9Q96QG7 549 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 TCF25Q9BQ70 676 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 S1PR5Q9H228 398 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 DACT1Q9NYF0 836 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 COL4A3BPQ9Y5P4 624 aa20.27■□□□□ 0.84
CHD3-214ENST00000572579 ZNF623O75123 536 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 OFD1O75665 1012 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 BCAR1P56945 870 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 LAMTOR4Q0VGL1 99 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 TMEM184AQ6ZMB5 413 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 TPH2Q8IWU9 490 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 DIS3L2Q8IYB7 885 aaKnown RBP20.26■□□□□ 0.83
CHD3-214ENST00000572579 ABI1Q8IZP0 508 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 BCL7CQ8WUZ0 217 aaPredicted RBP20.26■□□□□ 0.83
CHD3-214ENST00000572579 PPP2R3CQ969Q6 453 aa20.26■□□□□ 0.83
CHD3-214ENST00000572579 KIF2CQ99661 725 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms