RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 ERMNQ8TAM6 284 aa16.12■□□□□ 0.17
COMMD4-225ENST00000569245 TCP11Q8WWU5 503 aa16.12■□□□□ 0.17
COMMD4-225ENST00000569245 PRPF31Q8WWY3 499 aaKnown RBP16.12■□□□□ 0.17
COMMD4-225ENST00000569245 PSPC1Q8WXF1 523 aaKnown RBP16.12■□□□□ 0.17
COMMD4-225ENST00000569245 ZNF689Q96CS4 500 aaPredicted RBP16.12■□□□□ 0.17
COMMD4-225ENST00000569245 DHX33Q9H6R0 707 aaKnown RBP16.12■□□□□ 0.17
COMMD4-225ENST00000569245 ATP6V0A4Q9HBG4 840 aa16.12■□□□□ 0.17
COMMD4-225ENST00000569245 LMCD1Q9NZU5 365 aa16.12■□□□□ 0.17
COMMD4-225ENST00000569245 COL4A3BPQ9Y5P4 624 aa16.12■□□□□ 0.17
COMMD4-225ENST00000569245 SIP14410 1827 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 A0A087WWV3 80 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 TBKBP1A7MCY6 615 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 C9IYK1 514 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 H3BNC9 293 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 BMPR1AP36894 532 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 TOB1P50616 345 aaPredicted RBP16.11■□□□□ 0.17
COMMD4-225ENST00000569245 DSC3Q14574 896 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 SPOUT1Q5T280 376 aaKnown RBP16.11■□□□□ 0.17
COMMD4-225ENST00000569245 CRIPAKQ8N1N5 446 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 RNF169Q8NCN4 708 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 PIGOQ8TEQ8 1089 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 CHAMP1Q96JM3 812 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 USP28Q96RU2 1077 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 MTRQ99707 1265 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 C11orf84Q9BUA3 381 aaPredicted RBP16.11■□□□□ 0.17
COMMD4-225ENST00000569245 SCAND2PQ9GZW5 306 aaPredicted RBP16.11■□□□□ 0.17
COMMD4-225ENST00000569245 RC3H2Q9HBD1 1191 aaKnown RBP16.11■□□□□ 0.17
COMMD4-225ENST00000569245 ANKEF1Q9NU02 776 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 THEGQ9P2T0 379 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 MRPL42Q9Y6G3 142 aaKnown RBP16.11■□□□□ 0.17
COMMD4-225ENST00000569245 EVPLQ92817 2033 aa16.11■□□□□ 0.17
COMMD4-225ENST00000569245 DLL1O00548 723 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 GAS2O43903 313 aaKnown RBP16.1■□□□□ 0.17
COMMD4-225ENST00000569245 LYPLA2O95372 231 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 RB1P06400 928 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 NASPP49321 788 aaPredicted RBP16.1■□□□□ 0.17
COMMD4-225ENST00000569245 FAM189BP81408 668 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 LAMTOR4Q0VGL1 99 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 FAM102BQ5T8I3 360 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 CATSPER4Q7RTX7 472 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 TMEM87AQ8NBN3 555 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 CLP1Q92989 425 aaKnown RBP16.1■□□□□ 0.17
COMMD4-225ENST00000569245 TUFT1Q9NNX1 390 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 TMEM161AQ9NX61 479 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 DACT1Q9NYF0 836 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 PCDHB6Q9Y5E3 794 aa16.1■□□□□ 0.17
COMMD4-225ENST00000569245 ASAP2O43150 1006 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 DGAT1O75907 488 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 FGFR1P11362 822 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 MCM4P33991 863 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 PTGDRQ13258 359 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 CSPP1Q1MSJ5 1256 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 TWF2Q6IBS0 349 aaKnown RBP16.09■□□□□ 0.17
COMMD4-225ENST00000569245 CATSPER3Q86XQ3 398 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 ABI1Q8IZP0 508 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 ATXN2LQ8WWM7 1075 aaKnown RBP16.09■□□□□ 0.17
COMMD4-225ENST00000569245 MRPL38Q96DV4 380 aaKnown RBP16.09■□□□□ 0.17
COMMD4-225ENST00000569245 NACC1Q96RE7 527 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 POLR3CQ9BUI4 534 aaPredicted RBP16.09■□□□□ 0.17
COMMD4-225ENST00000569245 ELAC1Q9H777 363 aaKnown RBP16.09■□□□□ 0.17
COMMD4-225ENST00000569245 CHST12Q9NRB3 414 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 TFIP11Q9UBB9 837 aaKnown RBP16.09■□□□□ 0.17
COMMD4-225ENST00000569245 LRWD1Q9UFC0 647 aa16.09■□□□□ 0.17
COMMD4-225ENST00000569245 PIN4Q9Y237 131 aaKnown RBP16.09■□□□□ 0.17
COMMD4-225ENST00000569245 GOLGA6L22H0YM25 854 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 HOXA2O43364 376 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 MED24O75448 989 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 CSPG5O95196 566 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 YEATS4O95619 227 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 SPATA31C1P0DKV0 1188 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 XRCC6P12956 609 aaKnown RBP eCLIP16.08■□□□□ 0.16
COMMD4-225ENST00000569245 NCLP19338 710 aaKnown RBP16.08■□□□□ 0.16
COMMD4-225ENST00000569245 RARRES1P49788 294 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 MRPS5P82675 430 aaKnown RBP16.08■□□□□ 0.16
COMMD4-225ENST00000569245 TFDP1Q14186 410 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 MXD4Q14582 209 aaPredicted RBP16.08■□□□□ 0.16
COMMD4-225ENST00000569245 HAUS3Q68CZ6 603 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 ECHDC2Q86YB7 292 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 C4orf32Q8N8J7 132 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 RNF149Q8NC42 400 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 PLVAPQ9BX97 442 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 RAB34Q9BZG1 259 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 IFT122Q9HBG6 1241 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.08■□□□□ 0.16
COMMD4-225ENST00000569245 AAASQ9NRG9 546 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 RCOR1Q9UKL0 485 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 MORC2Q9Y6X9 1032 aaPredicted RBP16.08■□□□□ 0.16
COMMD4-225ENST00000569245 REV3LO60673 3130 aa16.08■□□□□ 0.16
COMMD4-225ENST00000569245 TTC3P53804 2025 aa16.07■□□□□ 0.16
COMMD4-225ENST00000569245 A0A0U1RQF3 1178 aa16.07■□□□□ 0.16
COMMD4-225ENST00000569245 C5orf67F2Z3F1 127 aa16.07■□□□□ 0.16
COMMD4-225ENST00000569245 USO1O60763 962 aaKnown RBP16.07■□□□□ 0.16
COMMD4-225ENST00000569245 RPA1P27694 616 aa16.07■□□□□ 0.16
COMMD4-225ENST00000569245 CCT6AP40227 531 aaKnown RBP16.07■□□□□ 0.16
COMMD4-225ENST00000569245 PHKA2P46019 1235 aa16.07■□□□□ 0.16
COMMD4-225ENST00000569245 FXR2P51116 673 aaKnown RBP eCLIP16.07■□□□□ 0.16
COMMD4-225ENST00000569245 PTPAQ15257 358 aa16.07■□□□□ 0.16
COMMD4-225ENST00000569245 SF3A1Q15459 793 aaKnown RBP16.07■□□□□ 0.16
COMMD4-225ENST00000569245 NFKBIBQ15653 356 aa16.07■□□□□ 0.16
COMMD4-225ENST00000569245 POTEGQ6S5H5 508 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms