RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 NLRP4Q96MN2 994 aa22.65■■□□□ 1.22
CLK3-225ENST00000569063 DACT1Q9NYF0 836 aa22.65■■□□□ 1.22
CLK3-225ENST00000569063 TBKBP1A7MCY6 615 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 GRM6O15303 877 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 ASAP2O43150 1006 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 HOXA2O43364 376 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 SPATA31C1P0DKV0 1188 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 TFF2Q03403 129 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 C4orf32Q8N8J7 132 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 MTRQ99707 1265 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 TRAIPQ9BWF2 469 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 TUFT1Q9NNX1 390 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 PLAGL2Q9UPG8 496 aa22.64■■□□□ 1.21
CLK3-225ENST00000569063 DGAT1O75907 488 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 EOMESO95936 686 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 FGFR1P11362 822 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 RARRES1P49788 294 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 TOB1P50616 345 aaPredicted RBP22.63■■□□□ 1.21
CLK3-225ENST00000569063 LAMTOR4Q0VGL1 99 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 ZNF598Q86UK7 904 aaKnown RBP22.63■■□□□ 1.21
CLK3-225ENST00000569063 FERMT3Q86UX7 667 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 CATSPER3Q86XQ3 398 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 POLR3CQ9BUI4 534 aaPredicted RBP22.63■■□□□ 1.21
CLK3-225ENST00000569063 XPNPEP1Q9NQW7 623 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 BMP2KQ9NSY1 1161 aaPredicted RBP22.63■■□□□ 1.21
CLK3-225ENST00000569063 RNF19AQ9NV58 838 aa22.63■■□□□ 1.21
CLK3-225ENST00000569063 FNDC1Q4ZHG4 1894 aaPredicted RBP22.62■■□□□ 1.21
CLK3-225ENST00000569063 ARID2Q68CP9 1835 aa22.62■■□□□ 1.21
CLK3-225ENST00000569063 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.62■■□□□ 1.21
CLK3-225ENST00000569063 SRGAP2CP0DJJ0 459 aa22.62■■□□□ 1.21
CLK3-225ENST00000569063 SRGAP1Q7Z6B7 1085 aa22.62■■□□□ 1.21
CLK3-225ENST00000569063 CASD1Q96PB1 797 aa22.62■■□□□ 1.21
CLK3-225ENST00000569063 TMEM117Q9H0C3 514 aa22.62■■□□□ 1.21
CLK3-225ENST00000569063 NSUN3Q9H649 340 aaKnown RBP22.62■■□□□ 1.21
CLK3-225ENST00000569063 MED24O75448 989 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 BMP1P13497 986 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 RPA1P27694 616 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 GJB2P29033 226 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 FXR2P51116 673 aaKnown RBP eCLIP22.61■■□□□ 1.21
CLK3-225ENST00000569063 MXD4Q14582 209 aaPredicted RBP22.61■■□□□ 1.21
CLK3-225ENST00000569063 NBR1Q14596 966 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 CATSPER4Q7RTX7 472 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 KLHL23Q8NBE8 558 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 ERMNQ8TAM6 284 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 PIGOQ8TEQ8 1089 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 ALG13Q9NP73 1137 aaKnown RBP22.61■■□□□ 1.21
CLK3-225ENST00000569063 AAASQ9NRG9 546 aa22.61■■□□□ 1.21
CLK3-225ENST00000569063 TYW1Q9NV66 732 aaKnown RBP22.61■■□□□ 1.21
CLK3-225ENST00000569063 KIAA1671Q9BY89 1806 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 ITGB1P05556 798 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 ATF7P17544 494 aaPredicted RBP22.6■■□□□ 1.21
CLK3-225ENST00000569063 POU5F1BQ06416 359 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 CAMK1Q14012 370 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 TCEAL5Q5H9L2 206 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 RNF149Q8NC42 400 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 SPPL3Q8TCT6 385 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 CCDC43Q96MW1 224 aaKnown RBP22.6■■□□□ 1.21
CLK3-225ENST00000569063 BACH2Q9BYV9 841 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 CWH43Q9H720 699 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 MINDY3Q9H8M7 445 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 AGPAT5Q9NUQ2 364 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 DBR1Q9UK59 544 aaKnown RBP22.6■■□□□ 1.21
CLK3-225ENST00000569063 PIN4Q9Y237 131 aaKnown RBP22.6■■□□□ 1.21
CLK3-225ENST00000569063 PCDHB6Q9Y5E3 794 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 PCDHB12Q9Y5F1 795 aa22.6■■□□□ 1.21
CLK3-225ENST00000569063 A0A087WWV3 80 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 SKIP12755 728 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 MUTP22033 750 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 ARL2P36404 184 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 PHKA2P46019 1235 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 KCNQ1P51787 676 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 PTGDRQ13258 359 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 PDIA5Q14554 519 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 COL19A1Q14993 1142 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 CLLU1OSQ5K130 101 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 TWF2Q6IBS0 349 aaKnown RBP22.59■■□□□ 1.21
CLK3-225ENST00000569063 LRRC55Q6ZSA7 311 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 ABI1Q8IZP0 508 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 NACC1Q96RE7 527 aa22.59■■□□□ 1.21
CLK3-225ENST00000569063 UBE2ZQ9H832 354 aaPredicted RBP22.59■■□□□ 1.21
CLK3-225ENST00000569063 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.59■■□□□ 1.21
CLK3-225ENST00000569063 LAD1O00515 517 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 ZNF623O75123 536 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 DNAJB1P25685 340 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 PTENP60484 403 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 PCBP1Q15365 356 aaKnown RBP eCLIP22.58■■□□□ 1.21
CLK3-225ENST00000569063 CSPP1Q1MSJ5 1256 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 SPOUT1Q5T280 376 aaKnown RBP22.58■■□□□ 1.21
CLK3-225ENST00000569063 MCTP1Q6DN14 999 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 IFNLR1Q8IU57 520 aaPredicted RBP22.58■■□□□ 1.21
CLK3-225ENST00000569063 RNF169Q8NCN4 708 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 ADAMTS19Q8TE59 1207 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 FAM105AQ9NUU6 356 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 HCSTQ9UBK5 93 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 SMC3Q9UQE7 1217 aa22.58■■□□□ 1.21
CLK3-225ENST00000569063 SPTBN5Q9NRC6 3674 aaKnown RBP22.58■■□□□ 1.21
CLK3-225ENST00000569063 LAG3P18627 525 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 RAB27AP51159 221 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 TFDP1Q14186 410 aa22.57■■□□□ 1.2
CLK3-225ENST00000569063 RILPL1Q5EBL4 403 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms