RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 CACNA2D3Q8IZS8 1091 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 OTUD6BQ8N6M0 293 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 CEP120Q8N960 986 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 NAT8LQ8N9F0 302 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 MARCH10Q8NA82 808 aaPredicted RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 OR13H1Q8NG92 308 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 ZNF622Q969S3 477 aaKnown RBP eCLIP3.5□□□□□ -1.85
VPS35-209ENST00000568642 MEGF10Q96KG7 1140 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 TEKT5Q96M29 485 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 APOL5Q9BWW9 433 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 AP1M1Q9BXS5 423 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 STK31Q9BXU1 1019 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 TMEM60Q9H2L4 133 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 PHAXQ9H814 394 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 DMRT3Q9NQL9 472 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 TOPORSQ9NS56 1045 aaPredicted RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 ADGRE2Q9UHX3 823 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 ISY1Q9ULR0 285 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 TMCC3Q9ULS5 477 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 FNDC3AQ9Y2H6 1198 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 TTLL3Q9Y4R7 772 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 TCF20Q9UGU0 1960 aaKnown RBP3.5□□□□□ -1.85
VPS35-209ENST00000568642 ACACBO00763 2458 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 IFT172Q9UG01 1749 aa3.5□□□□□ -1.85
VPS35-209ENST00000568642 ZNF462Q96JM2 2506 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 IQGAP3Q86VI3 1631 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 A0A0G2JLW4 131 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 SYNDIG1LA6NDD5 238 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PABPN1LA6NDY0 278 aaKnown RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 ADARB2-AS1A8MUL3 147 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 H3BRJ5 948 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 OPA1O60313 960 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 MMP20O60882 483 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TBX18O95935 607 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TGFB1P01137 390 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 CKMP06732 381 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 HNRNPCP07910 306 aaKnown RBP eCLIP3.49□□□□□ -1.85
VPS35-209ENST00000568642 POU2F2P09086 479 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 EDN3P14138 238 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 ATP2A2P16615 1042 aaKnown RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 PIK3CAP42336 1068 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TGFB2P61812 414 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 DCAF7P61962 342 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 GABREP78334 506 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PDE1CQ14123 709 aaPredicted RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 MEA1Q16626 185 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 ZNF423Q2M1K9 1284 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 CFAP100Q494V2 611 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 HSF5Q4G112 596 aaPredicted RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 ZNF362Q5T0B9 420 aaPredicted RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 FAM205BPQ63HN1 556 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TTLL5Q6EMB2 1281 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TMEM214Q6NUQ4 689 aaKnown RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 HIBCHQ6NVY1 386 aaPredicted RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 ZNF449Q6P9G9 518 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TXNDC11Q6PKC3 985 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 NSMFQ6X4W1 530 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 C20orf204Q6ZNR8 217 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 RASGRP2Q7LDG7 609 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 C11orf74Q86VG3 221 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 CPOQ8IVL8 374 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TMEM192Q8IY95 271 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 SLFN12Q8IYM2 578 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PRR18Q8N4B5 295 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 POU5F2Q8N7G0 328 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 RNF152Q8N8N0 203 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 LSM14AQ8ND56 463 aaKnown RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 OR2W6PQ8NHA6 318 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 LILRB1Q8NHL6 650 aaPredicted RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 SSH3Q8TE77 659 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 JADE3Q92613 823 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PMEPA1Q969W9 287 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 NXPE3Q969Y0 559 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 CDC6Q99741 560 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TMEM120AQ9BXJ8 343 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 NIFKQ9BYG3 293 aaKnown RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 KLHL25Q9H0H3 589 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 LMAN2LQ9H0V9 348 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 MYLK2Q9H1R3 596 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PRO3102Q9H379 93 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PLEKHA5Q9HAU0 1116 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 SMC4Q9NTJ3 1288 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 MRGBPQ9NV56 204 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 C14orf119Q9NWQ9 140 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PPP4R2Q9NY27 417 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 IFT80Q9P2H3 777 aaPredicted RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 GRHPRQ9UBQ7 328 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 NDOR1Q9UHB4 597 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 CYP8B1Q9UNU6 501 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 TMEM98Q9Y2Y6 226 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 CHMP3Q9Y3E7 222 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 KDM6AO15550 1401 aaPredicted RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 CRB1P82279 1406 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PTPRZ1P23471 2315 aaPredicted RBP3.49□□□□□ -1.85
VPS35-209ENST00000568642 LMO7Q8WWI1 1683 aa3.49□□□□□ -1.85
VPS35-209ENST00000568642 PRXQ9BXM0 1461 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 CLSPNQ9HAW4 1339 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 UBR3Q6ZT12 1888 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 A0A096LPE4 126 aa3.48□□□□□ -1.85
VPS35-209ENST00000568642 A0A1W2PPZ6 126 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms