RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 UPF3BQ9BZI7 483 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 ALDH8A1Q9H2A2 487 aaPredicted RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 NOL6Q9H6R4 1146 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 HELLSQ9NRZ9 838 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 BSDC1Q9NW68 430 aaPredicted RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 TMEM260Q9NX78 707 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 LRP2BPQ9P2M1 347 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 PFDN2Q9UHV9 154 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 TRMT112Q9UI30 125 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 RBM8AQ9Y5S9 174 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 MRPL42Q9Y6G3 142 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 ANKRD18BA2A2Z9 1011 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 SLC27A2O14975 620 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 PDE8AO60658 829 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 COBLO75128 1261 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 IFIT1P09914 478 aaKnown RBP6.9□□□□□ -1.3
VPS39-209ENST00000568029 FGFR1P11362 822 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 RPS12P25398 132 aaKnown RBP6.9□□□□□ -1.3
VPS39-209ENST00000568029 CTSKP43235 329 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 TIMM10P62072 90 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 PPP2R2AP63151 447 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 POU4F1Q01851 419 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 GRAPQ13588 217 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 SLC4A8Q2Y0W8 1093 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 SLC9C1Q4G0N8 1177 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 MCMDC2Q4G0Z9 681 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 LRRC24Q50LG9 513 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 TMEM67Q5HYA8 995 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 TTC39AQ5SRH9 613 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 XP32Q5T750 250 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 CDKAL1Q5VV42 579 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 CWF19L1Q69YN2 538 aaKnown RBP6.9□□□□□ -1.3
VPS39-209ENST00000568029 MCTP1Q6DN14 999 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 RNF111Q6ZNA4 994 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 NOL8Q76FK4 1167 aaKnown RBP6.9□□□□□ -1.3
VPS39-209ENST00000568029 RUFY3Q7L099 469 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 UBE2Q1Q7Z7E8 422 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 DEFB123Q8N688 67 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 GRAPLQ8TC17 118 aaPredicted RBP6.9□□□□□ -1.3
VPS39-209ENST00000568029 BRF1Q92994 677 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 CHMP4CQ96CF2 233 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 TCTN2Q96GX1 697 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 TTC14Q96N46 770 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 AARSD1Q9BTE6 412 aaKnown RBP6.9□□□□□ -1.3
VPS39-209ENST00000568029 IL25Q9H293 177 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 MYOZ2Q9NPC6 264 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 ARHGEF4Q9NR80 690 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 PAG1Q9NWQ8 432 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 SMC3Q9UQE7 1217 aa6.9□□□□□ -1.3
VPS39-209ENST00000568029 TRAV20A0A0B4J274 112 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 A0A0D9SFI3 127 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 A0A1B0GUL7 405 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 GOLIM4O00461 696 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 IRS4O14654 1257 aaPredicted RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 RNF113AO15541 343 aaKnown RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 TAF5LO75529 589 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 ZNF205O95201 554 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 SCG5P05408 212 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 ZFYP08048 801 aaPredicted RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 VIL1P09327 827 aaKnown RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 NCLP19338 710 aaKnown RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 HSD3B2P26439 372 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 TPP2P29144 1249 aaPredicted RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 HOXC12P31275 282 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 NOP2P46087 812 aaKnown RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 AK2P54819 239 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 CTSWP56202 376 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 AMPD2Q01433 879 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 KLHL40Q2TBA0 621 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 PARP10Q53GL7 1025 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 ZSCAN25Q6NSZ9 544 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 BLOC1S2Q6QNY1 142 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 LDHAL6AQ6ZMR3 332 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 HOMER1Q86YM7 354 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 ADCY4Q8NFM4 1077 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 TBC1D16Q8TBP0 767 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 UBE2FQ969M7 185 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 ERO1AQ96HE7 468 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 WNK4Q96J92 1243 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 CYP26B1Q9NR63 512 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 CNNM1Q9NRU3 951 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 LMCD1Q9NZU5 365 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 ANGEL1Q9UNK9 670 aaKnown RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 ATP6V1DQ9Y5K8 247 aa6.89□□□□□ -1.31
VPS39-209ENST00000568029 DDX49Q9Y6V7 483 aaKnown RBP6.89□□□□□ -1.31
VPS39-209ENST00000568029 ECM29Q5VYK3 1845 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 SH3TC1Q8TE82 1336 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 KIAA1324LA8MWY0 1029 aaPredicted RBP6.88□□□□□ -1.31
VPS39-209ENST00000568029 H0Y8X5 98 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 H3BS24 57 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 BBOX1O75936 387 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 HMGB1P09429 215 aaKnown RBP6.88□□□□□ -1.31
VPS39-209ENST00000568029 FAM153BP0C7A2 387 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 PDCP20941 246 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 RPS6KB1P23443 525 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 ITGB7P26010 798 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 CTGFP29279 349 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 CD97P48960 835 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 MRE11P49959 708 aa6.88□□□□□ -1.31
VPS39-209ENST00000568029 PCBP3P57721 371 aaKnown RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms