RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 BACH2Q9BYV9 841 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 RAB34Q9BZG1 259 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 AAASQ9NRG9 546 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 SMC3Q9UQE7 1217 aa20.86■□□□□ 0.93
CLN3-227ENST00000567495 LAD1O00515 517 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 ZBTB39O15060 712 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 MUTP22033 750 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 RPA1P27694 616 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 GJB2P29033 226 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 TECP42680 631 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 FXR2P51116 673 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLN3-227ENST00000567495 LAMTOR4Q0VGL1 99 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 PCBP1Q15365 356 aaKnown RBP eCLIP20.85■□□□□ 0.93
CLN3-227ENST00000567495 CSPP1Q1MSJ5 1256 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 PAN2Q504Q3 1202 aaKnown RBP20.85■□□□□ 0.93
CLN3-227ENST00000567495 HAUS3Q68CZ6 603 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 FERMT3Q86UX7 667 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 ECHDC2Q86YB7 292 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 HLA-CQ95604 372 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 TMEM117Q9H0C3 514 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 IFT122Q9HBG6 1241 aa20.85■□□□□ 0.93
CLN3-227ENST00000567495 TBKBP1A7MCY6 615 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 SPATA31C1P0DKV0 1188 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 IBSPP21815 317 aaPredicted RBP20.84■□□□□ 0.93
CLN3-227ENST00000567495 RARRES1P49788 294 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 POU5F1BQ06416 359 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 TFDP1Q14186 410 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 PDIA5Q14554 519 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 RILPL1Q5EBL4 403 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 FAM102BQ5T8I3 360 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 MCTP1Q6DN14 999 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 CATSPER4Q7RTX7 472 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 CATSPER3Q86XQ3 398 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 KSR1Q8IVT5 923 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 ABI1Q8IZP0 508 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 C4orf32Q8N8J7 132 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 DBR1Q9UK59 544 aaKnown RBP20.84■□□□□ 0.93
CLN3-227ENST00000567495 PCDHB12Q9Y5F1 795 aa20.84■□□□□ 0.93
CLN3-227ENST00000567495 WDR81Q562E7 1941 aa20.83■□□□□ 0.93
CLN3-227ENST00000567495 CSDE1O75534 798 aaKnown RBP20.83■□□□□ 0.93
CLN3-227ENST00000567495 SRGAP2CP0DJJ0 459 aa20.83■□□□□ 0.93
CLN3-227ENST00000567495 FGFR4P22455 802 aa20.83■□□□□ 0.93
CLN3-227ENST00000567495 PHKA2P46019 1235 aa20.83■□□□□ 0.93
CLN3-227ENST00000567495 TOB1P50616 345 aaPredicted RBP20.83■□□□□ 0.93
CLN3-227ENST00000567495 RAB27AP51159 221 aa20.83■□□□□ 0.93
CLN3-227ENST00000567495 PLAGL2Q9UPG8 496 aa20.83■□□□□ 0.93
CLN3-227ENST00000567495 PIN4Q9Y237 131 aaKnown RBP20.83■□□□□ 0.93
CLN3-227ENST00000567495 NCK2O43639 380 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 PRPHP41219 470 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 GATMP50440 423 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 PTGDRQ13258 359 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 TWF2Q6IBS0 349 aaKnown RBP20.82■□□□□ 0.92
CLN3-227ENST00000567495 RNF149Q8NC42 400 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 MCPH1Q8NEM0 835 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 PIGOQ8TEQ8 1089 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 COL25A1Q9BXS0 654 aaPredicted RBP20.82■□□□□ 0.92
CLN3-227ENST00000567495 NSUN3Q9H649 340 aaKnown RBP20.82■□□□□ 0.92
CLN3-227ENST00000567495 XPNPEP1Q9NQW7 623 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 TTC28Q96AY4 2481 aa20.82■□□□□ 0.92
CLN3-227ENST00000567495 GRM6O15303 877 aa20.81■□□□□ 0.92
CLN3-227ENST00000567495 ZNF623O75123 536 aa20.81■□□□□ 0.92
CLN3-227ENST00000567495 FGFR1P11362 822 aa20.81■□□□□ 0.92
CLN3-227ENST00000567495 LAG3P18627 525 aa20.81■□□□□ 0.92
CLN3-227ENST00000567495 NCBP1Q09161 790 aaKnown RBP20.81■□□□□ 0.92
CLN3-227ENST00000567495 SPOUT1Q5T280 376 aaKnown RBP20.81■□□□□ 0.92
CLN3-227ENST00000567495 LARP1BQ659C4 914 aaKnown RBP20.81■□□□□ 0.92
CLN3-227ENST00000567495 ZNF598Q86UK7 904 aaKnown RBP20.81■□□□□ 0.92
CLN3-227ENST00000567495 LRRC43Q8N309 656 aa20.81■□□□□ 0.92
CLN3-227ENST00000567495 BMP2KQ9NSY1 1161 aaPredicted RBP20.81■□□□□ 0.92
CLN3-227ENST00000567495 AGPAT5Q9NUQ2 364 aa20.81■□□□□ 0.92
CLN3-227ENST00000567495 TYW1Q9NV66 732 aaKnown RBP20.81■□□□□ 0.92
CLN3-227ENST00000567495 LRWD1Q9UFC0 647 aa20.81■□□□□ 0.92
CLN3-227ENST00000567495 PCDHB6Q9Y5E3 794 aa20.81■□□□□ 0.92
CLN3-227ENST00000567495 CARNS1A5YM72 827 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 MED24O75448 989 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 ARL2P36404 184 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 PTENP60484 403 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 UBE3AQ05086 875 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 CUL4AQ13619 759 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 NBR1Q14596 966 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 IFNLR1Q8IU57 520 aaPredicted RBP20.8■□□□□ 0.92
CLN3-227ENST00000567495 KLHL23Q8NBE8 558 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 RNF169Q8NCN4 708 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 PPP2R3CQ969Q6 453 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 CASD1Q96PB1 797 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 MRPL9Q9BYD2 267 aaKnown RBP20.8■□□□□ 0.92
CLN3-227ENST00000567495 NFKBIZQ9BYH8 718 aa20.8■□□□□ 0.92
CLN3-227ENST00000567495 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.8■□□□□ 0.92
CLN3-227ENST00000567495 PDCP20941 246 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 AXLP30530 894 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 CCT6AP40227 531 aaKnown RBP20.79■□□□□ 0.92
CLN3-227ENST00000567495 DTHD1Q6ZMT9 781 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 IGSF22Q8N9C0 903 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 SPPL3Q8TCT6 385 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 PGBD4Q96DM1 585 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 CCDC51Q96ER9 411 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 FAM105AQ9NUU6 356 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 RNF19AQ9NV58 838 aa20.79■□□□□ 0.92
CLN3-227ENST00000567495 ARHGEF35A5YM69 484 aa20.78■□□□□ 0.92
CLN3-227ENST00000567495 USO1O60763 962 aaKnown RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms