RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 KCNMB3Q9NPA1 279 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 PPP4R2Q9NY27 417 aa16.72■□□□□ 0.27
CLN3-222ENST00000566083 SUCLA2Q9P2R7 463 aaPredicted RBP16.72■□□□□ 0.27
CLN3-222ENST00000566083 KIAA1671Q9BY89 1806 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 LINC01565O15544 149 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 GAS2O43903 313 aaKnown RBP16.71■□□□□ 0.27
CLN3-222ENST00000566083 STBD1O95210 358 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 RAB27AP51159 221 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 CLUL1Q15846 466 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 OTUD6AQ7L8S5 288 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 ADGRD2Q7Z7M1 963 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 RBM23Q86U06 439 aaKnown RBP16.71■□□□□ 0.27
CLN3-222ENST00000566083 CEP89Q96ST8 783 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 CYP26B1Q9NR63 512 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 SPG21Q9NZD8 308 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 CLEC1BQ9P126 229 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 TPCN1Q9ULQ1 816 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 KCNJ14Q9UNX9 436 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 ATG2AQ2TAZ0 1938 aa16.71■□□□□ 0.27
CLN3-222ENST00000566083 FSCN2O14926 492 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 CCNT1O60563 726 aaKnown RBP16.7■□□□□ 0.26
CLN3-222ENST00000566083 RFC5P40937 340 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 ALDH7A1P49419 539 aaKnown RBP16.7■□□□□ 0.26
CLN3-222ENST00000566083 DUSP6Q16828 381 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 TMEM184AQ6ZMB5 413 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 ZNF598Q86UK7 904 aaKnown RBP16.7■□□□□ 0.26
CLN3-222ENST00000566083 RNF169Q8NCN4 708 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 C11orf16Q9NQ32 467 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 ORC3Q9UBD5 711 aaPredicted RBP16.7■□□□□ 0.26
CLN3-222ENST00000566083 A0A087WZ62 844 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 ASAP2O43150 1006 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 SLC37A4O43826 429 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 ATF7P17544 494 aaPredicted RBP16.7■□□□□ 0.26
CLN3-222ENST00000566083 EPHA7Q15375 998 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 TWF2Q6IBS0 349 aaKnown RBP16.7■□□□□ 0.26
CLN3-222ENST00000566083 PIK3AP1Q6ZUJ8 805 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 ANO5Q75V66 913 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 RHPN2Q8IUC4 686 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 C4orf19Q8IY42 314 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 TCP11Q8WWU5 503 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 TCF25Q9BQ70 676 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 FDXACB1Q9BRP7 624 aaPredicted RBP16.7■□□□□ 0.26
CLN3-222ENST00000566083 ENTPD7Q9NQZ7 604 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 STK39Q9UEW8 545 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 VAV3Q9UKW4 847 aa16.7■□□□□ 0.26
CLN3-222ENST00000566083 MUC6Q6W4X9 2439 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 PIEZO1Q92508 2521 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 ZNF623O75123 536 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 HOXB8P17481 243 aaPredicted RBP16.69■□□□□ 0.26
CLN3-222ENST00000566083 PHKA2P46019 1235 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 POLGP54098 1239 aaPredicted RBP16.69■□□□□ 0.26
CLN3-222ENST00000566083 ERVFC1P60507 584 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 PCBP1Q15365 356 aaKnown RBP eCLIP16.69■□□□□ 0.26
CLN3-222ENST00000566083 HERC4Q5GLZ8 1057 aaPredicted RBP16.69■□□□□ 0.26
CLN3-222ENST00000566083 LRRC55Q6ZSA7 311 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 CATSPER4Q7RTX7 472 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 SRGAP1Q7Z6B7 1085 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 PGBD4Q96DM1 585 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 ZNF668Q96K58 619 aaPredicted RBP16.69■□□□□ 0.26
CLN3-222ENST00000566083 CEP170P1Q96L14 293 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 ZSWIM4Q9H7M6 989 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 RNF19AQ9NV58 838 aa16.69■□□□□ 0.26
CLN3-222ENST00000566083 FAM86C2PA6NEL3 165 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 EML1O00423 815 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 KRT2P35908 639 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 AK2P54819 239 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 DRP2Q13474 957 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 GIT2Q14161 759 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 CLLU1OSQ5K130 101 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 GLB1LQ6UWU2 654 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 TMC7Q7Z402 723 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 HELQQ8TDG4 1101 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 PSPC1Q8WXF1 523 aaKnown RBP16.68■□□□□ 0.26
CLN3-222ENST00000566083 TMEM169Q96HH4 297 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 PHF7Q9BWX1 381 aaPredicted RBP16.68■□□□□ 0.26
CLN3-222ENST00000566083 KCNH6Q9H252 994 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 DHX33Q9H6R0 707 aaKnown RBP16.68■□□□□ 0.26
CLN3-222ENST00000566083 BARX2Q9UMQ3 279 aaPredicted RBP16.68■□□□□ 0.26
CLN3-222ENST00000566083 PIN4Q9Y237 131 aaKnown RBP16.68■□□□□ 0.26
CLN3-222ENST00000566083 COL4A3BPQ9Y5P4 624 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 PLXNA4Q9HCM2 1894 aa16.68■□□□□ 0.26
CLN3-222ENST00000566083 PER2O15055 1255 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 GLP2RO95838 553 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 FGFR4P22455 802 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 YWHABP31946 246 aaKnown RBP16.67■□□□□ 0.26
CLN3-222ENST00000566083 TRIM29Q14134 588 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 SMC1AQ14683 1233 aaKnown RBP16.67■□□□□ 0.26
CLN3-222ENST00000566083 PLPP4Q5VZY2 271 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 RNF135Q8IUD6 432 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 SLC39A11Q8N1S5 342 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 HAS1Q92839 578 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 NLRP4Q96MN2 994 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 LXNQ9BS40 222 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 FAM105AQ9NUU6 356 aa16.67■□□□□ 0.26
CLN3-222ENST00000566083 USP15Q9Y4E8 981 aaPredicted RBP16.67■□□□□ 0.26
CLN3-222ENST00000566083 TMEM150BA6NC51 233 aa16.66■□□□□ 0.26
CLN3-222ENST00000566083 CSDE1O75534 798 aaKnown RBP16.66■□□□□ 0.26
CLN3-222ENST00000566083 NCBP1Q09161 790 aaKnown RBP16.66■□□□□ 0.26
CLN3-222ENST00000566083 MXD4Q14582 209 aaPredicted RBP16.66■□□□□ 0.26
CLN3-222ENST00000566083 MRPL43Q8N983 215 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms