RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 RFC5P40937 340 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 DNM2P50570 870 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 CYP4A11Q02928 519 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 PRPF31Q8WWY3 499 aaKnown RBP16.64■□□□□ 0.25
CLN3-213ENST00000565047 JPH2Q9BR39 696 aaPredicted RBP16.64■□□□□ 0.25
CLN3-213ENST00000565047 TMEM117Q9H0C3 514 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 CD320Q9NPF0 282 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 XPNPEP1Q9NQW7 623 aa16.64■□□□□ 0.25
CLN3-213ENST00000565047 PLXNA4Q9HCM2 1894 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 GRXCR2A6NFK2 248 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 EOMESO95936 686 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 SPATA31C1P0DKV0 1188 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 DLX2Q07687 328 aaPredicted RBP16.63■□□□□ 0.25
CLN3-213ENST00000565047 TRIM29Q14134 588 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 COLGALT1Q8NBJ5 622 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 SLC7A3Q8WY07 619 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 TMEM143Q96AN5 459 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 C8orf76Q96K31 380 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 FOXP1Q9H334 677 aaPredicted RBP16.63■□□□□ 0.25
CLN3-213ENST00000565047 MINDY3Q9H8M7 445 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 SH2B1Q9NRF2 756 aaPredicted RBP16.63■□□□□ 0.25
CLN3-213ENST00000565047 COL4A3BPQ9Y5P4 624 aa16.63■□□□□ 0.25
CLN3-213ENST00000565047 H3BQ06 376 aaPredicted RBP16.62■□□□□ 0.25
CLN3-213ENST00000565047 NCK2O43639 380 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 MARCH6O60337 910 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 IBSPP21815 317 aaPredicted RBP16.62■□□□□ 0.25
CLN3-213ENST00000565047 HOXA11P31270 313 aaPredicted RBP16.62■□□□□ 0.25
CLN3-213ENST00000565047 TXKP42681 527 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 PHKA2P46019 1235 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 UBE3AQ05086 875 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 LAMTOR4Q0VGL1 99 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 ADAM15Q13444 863 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 OTUD6AQ7L8S5 288 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 ADGRD2Q7Z7M1 963 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 FERMT3Q86UX7 667 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 TPH2Q8IWU9 490 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 EXOC8Q8IYI6 725 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 C4orf32Q8N8J7 132 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 IL27Q8NEV9 243 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 KHSRPQ92945 711 aaKnown RBP eCLIP16.62■□□□□ 0.25
CLN3-213ENST00000565047 NLRP4Q96MN2 994 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 INO80BQ9C086 356 aaPredicted RBP16.62■□□□□ 0.25
CLN3-213ENST00000565047 ANKEF1Q9NU02 776 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 DACT1Q9NYF0 836 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 PCDHGC5Q9Y5F6 944 aa16.62■□□□□ 0.25
CLN3-213ENST00000565047 FSCN2O14926 492 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 LINC01565O15544 149 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 HOXA2O43364 376 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 GAS2O43903 313 aaKnown RBP16.61■□□□□ 0.25
CLN3-213ENST00000565047 ZNF623O75123 536 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 FGF18O76093 207 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 IL9P15248 144 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 SFPQP23246 707 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLN3-213ENST00000565047 U2AF2P26368 475 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLN3-213ENST00000565047 POLGP54098 1239 aaPredicted RBP16.61■□□□□ 0.25
CLN3-213ENST00000565047 ERVFC1P60507 584 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 HMGN5P82970 282 aaKnown RBP16.61■□□□□ 0.25
CLN3-213ENST00000565047 PLCB3Q01970 1234 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 EMC2Q15006 297 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 UBXN11Q5T124 520 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 FAM178BQ8IXR5 827 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 PSPC1Q8WXF1 523 aaKnown RBP16.61■□□□□ 0.25
CLN3-213ENST00000565047 SCLT1Q96NL6 688 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 PCDHB12Q9Y5F1 795 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 ARID2Q68CP9 1835 aa16.61■□□□□ 0.25
CLN3-213ENST00000565047 C5orf42Q9H799 3197 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 POTEMA6NI47 508 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 MEIS3P2A8K0S8 358 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 ASAP2O43150 1006 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 TBX10O75333 385 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 CD2BP2O95400 341 aaKnown RBP16.6■□□□□ 0.25
CLN3-213ENST00000565047 XRCC6P12956 609 aaKnown RBP eCLIP16.6■□□□□ 0.25
CLN3-213ENST00000565047 LAG3P18627 525 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 MCM7P33993 719 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 ARL2P36404 184 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 RARRES1P49788 294 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 POU5F1BQ06416 359 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 ORC2Q13416 577 aaPredicted RBP16.6■□□□□ 0.25
CLN3-213ENST00000565047 XKR9Q5GH70 373 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 PTCRAQ6ISU1 281 aaPredicted RBP16.6■□□□□ 0.25
CLN3-213ENST00000565047 SRGAP1Q7Z6B7 1085 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 CATSPER3Q86XQ3 398 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 IFNLR1Q8IU57 520 aaPredicted RBP16.6■□□□□ 0.25
CLN3-213ENST00000565047 MSLNLQ96KJ4 702 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 AAASQ9NRG9 546 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 BMP2KQ9NSY1 1161 aaPredicted RBP16.6■□□□□ 0.25
CLN3-213ENST00000565047 AGPAT5Q9NUQ2 364 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 CLDND1Q9NY35 253 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 LZTS1Q9Y250 596 aa16.6■□□□□ 0.25
CLN3-213ENST00000565047 A0A087WWV3 80 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 GLP2RO95838 553 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 SRGAP2CP0DJJ0 459 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 TOB1P50616 345 aaPredicted RBP16.59■□□□□ 0.25
CLN3-213ENST00000565047 KCNC3Q14003 757 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 RABEP1Q15276 862 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 SAFBQ15424 915 aaKnown RBP eCLIP16.59■□□□□ 0.25
CLN3-213ENST00000565047 ZNF174Q15697 407 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 CSPP1Q1MSJ5 1256 aa16.59■□□□□ 0.25
CLN3-213ENST00000565047 PUS10Q3MIT2 529 aaKnown RBP16.59■□□□□ 0.25
CLN3-213ENST00000565047 KCNT2Q6UVM3 1135 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms