RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 C11orf49Q9H6J7 331 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 GP6Q9HCN6 339 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 FAM86C1Q9NVL1 165 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 SCAF8Q9UPN6 1271 aaKnown RBP6.59□□□□□ -1.35
VPS35-204ENST00000563884 ZNF451Q9Y4E5 1061 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 USP16Q9Y5T5 823 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 FHOD1Q9Y613 1164 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 SPEF2Q9C093 1822 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 CDH23Q9H251 3354 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 CBFA2T2O43439 604 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 MYO1BO43795 1136 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 ADCY3O60266 1144 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 ERCC5P28715 1186 aaPredicted RBP6.58□□□□□ -1.36
VPS35-204ENST00000563884 MTHFSDQ2M296 383 aaKnown RBP6.58□□□□□ -1.36
VPS35-204ENST00000563884 SKOR2Q2VWA4 1001 aaPredicted RBP6.58□□□□□ -1.36
VPS35-204ENST00000563884 PAQR3Q6TCH7 311 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 PRRT2Q7Z6L0 340 aaPredicted RBP6.58□□□□□ -1.36
VPS35-204ENST00000563884 FAM169BQ8N8A8 192 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 BRI3BPQ8WY22 251 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 GMLQ99445 158 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 DEFB129Q9H1M3 183 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 ADAM7Q9H2U9 754 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 DOCK3Q8IZD9 2030 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 LRRC37A2A6NM11 1700 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 SPTBN4Q9H254 2564 aa6.58□□□□□ -1.36
VPS35-204ENST00000563884 ZNF804BA4D1E1 1349 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 FGF10O15520 208 aaPredicted RBP6.57□□□□□ -1.36
VPS35-204ENST00000563884 CYBBP04839 570 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 DBHP09172 617 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 TACR1P25103 407 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 TARBP2Q15633 366 aaKnown RBP6.57□□□□□ -1.36
VPS35-204ENST00000563884 AKNAD1Q5T1N1 836 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 ZNF34Q8IZ26 560 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 FAM43AQ8N2R8 423 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 FIBCD1Q8N539 461 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 TBC1D16Q8TBP0 767 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 DIS3LQ8TF46 1054 aaKnown RBP6.57□□□□□ -1.36
VPS35-204ENST00000563884 KLHL6Q8WZ60 621 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 TEPSINQ96N21 525 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS35-204ENST00000563884 PDLIM7Q9NR12 457 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 POLLQ9UGP5 575 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 DBR1Q9UK59 544 aaKnown RBP6.57□□□□□ -1.36
VPS35-204ENST00000563884 SF3B6Q9Y3B4 125 aaKnown RBP6.57□□□□□ -1.36
VPS35-204ENST00000563884 CEMIPQ8WUJ3 1361 aa6.57□□□□□ -1.36
VPS35-204ENST00000563884 MYH3P11055 1940 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 BAHCC1Q9P281 2608 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 CACNA1GO43497 2377 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 ZC3H12DA2A288 527 aaKnown RBP6.56□□□□□ -1.36
VPS35-204ENST00000563884 UFL1O94874 794 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 CD3EP07766 207 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 IGFBP6P24592 240 aaPredicted RBP6.56□□□□□ -1.36
VPS35-204ENST00000563884 IL13P35225 146 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 KCNC1P48547 511 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 GPSM2P81274 684 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 PRKCZQ05513 592 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 HSP90AB3PQ58FF7 597 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 DBX2Q6ZNG2 339 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 USP38Q8NB14 1042 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 TP53I13Q8NBR0 393 aaPredicted RBP6.56□□□□□ -1.36
VPS35-204ENST00000563884 CPLX3Q8WVH0 158 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 HAUS7Q99871 368 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 KLHL25Q9H0H3 589 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 TTYH1Q9H313 450 aaPredicted RBP6.56□□□□□ -1.36
VPS35-204ENST00000563884 NOL6Q9H6R4 1146 aaKnown RBP6.56□□□□□ -1.36
VPS35-204ENST00000563884 PODXL2Q9NZ53 605 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 DIS3Q9Y2L1 958 aaKnown RBP6.56□□□□□ -1.36
VPS35-204ENST00000563884 HCFC2Q9Y5Z7 792 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 PLXNA1Q9UIW2 1896 aa6.56□□□□□ -1.36
VPS35-204ENST00000563884 SH3TC1Q8TE82 1336 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 F8W031 263 aaPredicted RBP6.55□□□□□ -1.36
VPS35-204ENST00000563884 FFAR3O14843 346 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 SRGAP3O43295 1099 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 ITGA4P13612 1032 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 SLC7A5Q01650 507 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 POU4F1Q01851 419 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 NHLH1Q02575 133 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 SNAPC2Q13487 334 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 TNFAIP1Q13829 316 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 GNPTABQ3T906 1256 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 C17orf99Q6UX52 265 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 FRMD5Q7Z6J6 570 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 ZDHHC15Q96MV8 337 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 PTCHD1Q96NR3 888 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 FCRL3Q96P31 734 aaPredicted RBP6.55□□□□□ -1.36
VPS35-204ENST00000563884 TINF2Q9BSI4 451 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 WHRNQ9P202 907 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 SUSD2Q9UGT4 822 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 JAG2Q9Y219 1238 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 FAN1Q9Y2M0 1017 aa6.55□□□□□ -1.36
VPS35-204ENST00000563884 SMIM22K7EJ46 135 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 HMOX1P09601 288 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 IFNGR1P15260 489 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 SLURP1P55000 103 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 PRR5P85299 388 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 FOXO4P98177 505 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 TCEAL1Q15170 157 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 DLGAP5Q15398 846 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 VPS37DQ86XT2 251 aa6.54□□□□□ -1.36
VPS35-204ENST00000563884 NGEFQ8N5V2 710 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms