RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 LAMTOR4Q0VGL1 99 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 ADGRE1Q14246 886 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 DSC3Q14574 896 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 PCBP1Q15365 356 aaKnown RBP eCLIP14.9□□□□□ -0.02
CLK3-213ENST00000563842 FERMT3Q86UX7 667 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 CRIPAKQ8N1N5 446 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 MCPH1Q8NEM0 835 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 FBXO22Q8NEZ5 403 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 SNX29Q8TEQ0 813 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 BMP2KQ9NSY1 1161 aaPredicted RBP14.9□□□□□ -0.02
CLK3-213ENST00000563842 TMEM161AQ9NX61 479 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 CHD7Q9P2D1 2997 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 KIAA1671Q9BY89 1806 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 CDH23Q9H251 3354 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 ARHGEF35A5YM69 484 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 RB1P06400 928 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 SRGAP2CP0DJJ0 459 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 PHKA2P46019 1235 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 FAM189BP81408 668 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 NCBP1Q09161 790 aaKnown RBP14.89□□□□□ -0.03
CLK3-213ENST00000563842 POTEGQ6S5H5 508 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 CATSPER4Q7RTX7 472 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 KSR1Q8IVT5 923 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 TMEM192Q8IY95 271 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 KCTD17Q8N5Z5 321 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 RNF149Q8NC42 400 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 RC3H2Q9HBD1 1191 aaKnown RBP14.89□□□□□ -0.03
CLK3-213ENST00000563842 MTUS1Q9ULD2 1270 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 TRANK1O15050 2925 aa14.89□□□□□ -0.03
CLK3-213ENST00000563842 RFXAPO00287 272 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 USO1O60763 962 aaKnown RBP14.88□□□□□ -0.03
CLK3-213ENST00000563842 EOMESO95936 686 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 HSP90AA1P07900 732 aaKnown RBP14.88□□□□□ -0.03
CLK3-213ENST00000563842 SYT1P21579 422 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 IBSPP21815 317 aaPredicted RBP14.88□□□□□ -0.03
CLK3-213ENST00000563842 GRB10Q13322 594 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 EPC2Q52LR7 807 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 RSPH1Q8WYR4 309 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 CLP1Q92989 425 aaKnown RBP14.88□□□□□ -0.03
CLK3-213ENST00000563842 C17orf80Q9BSJ5 609 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 TRAIPQ9BWF2 469 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 IFT122Q9HBG6 1241 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 XPNPEP1Q9NQW7 623 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 KIAA1024Q9UPX6 916 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 DNM3Q9UQ16 869 aa14.88□□□□□ -0.03
CLK3-213ENST00000563842 VCANP13611 3396 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 A0A0U1RQF3 1178 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 EPOPA6NHQ4 379 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 RBAK-RBAKDNI3L0D1 243 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 CSDE1O75534 798 aaKnown RBP14.87□□□□□ -0.03
CLK3-213ENST00000563842 ERLIN2O94905 339 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 FGFR4P22455 802 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 AXLP30530 894 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 CTNNB1P35222 781 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 ARL2P36404 184 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 BMPR1AP36894 532 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 PTPROQ16827 1216 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 NAALADL2Q58DX5 795 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 TWF2Q6IBS0 349 aaKnown RBP14.87□□□□□ -0.03
CLK3-213ENST00000563842 ECHDC2Q86YB7 292 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 IFNLR1Q8IU57 520 aaPredicted RBP14.87□□□□□ -0.03
CLK3-213ENST00000563842 ABI1Q8IZP0 508 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 GDPD5Q8WTR4 605 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 AK8Q96MA6 479 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 PLVAPQ9BX97 442 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 NT5C3AQ9H0P0 336 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 ZSCAN16Q9H4T2 348 aaPredicted RBP14.87□□□□□ -0.03
CLK3-213ENST00000563842 AAASQ9NRG9 546 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 DDX19AQ9NUU7 478 aaKnown RBP14.87□□□□□ -0.03
CLK3-213ENST00000563842 PIN4Q9Y237 131 aaKnown RBP14.87□□□□□ -0.03
CLK3-213ENST00000563842 MTCH2Q9Y6C9 303 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 MYH15Q9Y2K3 1946 aa14.87□□□□□ -0.03
CLK3-213ENST00000563842 VWA3AA6NCI4 1184 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 C5orf67F2Z3F1 127 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 H3BNC9 293 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 SLC26A4O43511 780 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 CYP11B2P19099 503 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 COL9A1P20849 921 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 RAB27AP51159 221 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 PTENP60484 403 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 GPM6BQ13491 265 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 PADI6Q6TGC4 694 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 SPRED2Q7Z698 418 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 PPM1EQ8WY54 764 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 C11orf84Q9BUA3 381 aaPredicted RBP14.86□□□□□ -0.03
CLK3-213ENST00000563842 NFKBIZQ9BYH8 718 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 TMEM117Q9H0C3 514 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 POLR3FQ9H1D9 316 aaPredicted RBP14.86□□□□□ -0.03
CLK3-213ENST00000563842 FOXD4L1Q9NU39 408 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 AGPAT5Q9NUQ2 364 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 MYO7AQ13402 2215 aa14.86□□□□□ -0.03
CLK3-213ENST00000563842 A0A087WWV3 80 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 TBKBP1A7MCY6 615 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 STX6O43752 255 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 LPXNO60711 386 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 EYA4O95677 639 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 CAPSQ13938 189 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 PPP2R5AQ15172 486 aa14.85□□□□□ -0.03
CLK3-213ENST00000563842 CCDC85BQ15834 202 aaPredicted RBP14.85□□□□□ -0.03
CLK3-213ENST00000563842 IL17AQ16552 155 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms