RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 CELA3BP08861 270 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 ID4P47928 161 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 STAT5BP51692 787 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 RNF151Q2KHN1 245 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 GLB1LQ6UWU2 654 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 CLEC14AQ86T13 490 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 CIR1Q86X95 450 aaPredicted RBP4.62□□□□□ -1.67
VPS35-203ENST00000562420 UNC5BQ8IZJ1 945 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 DNERQ8NFT8 737 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 WDR66Q8TBY9 1149 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 NEIL1Q96FI4 390 aaPredicted RBP4.62□□□□□ -1.67
VPS35-203ENST00000562420 PAWRQ96IZ0 340 aaKnown RBP4.62□□□□□ -1.67
VPS35-203ENST00000562420 LMF1Q96S06 567 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 ORAI2Q96SN7 254 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 MENTQ9BUN1 341 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 BDH2Q9BUT1 245 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 KIAA1683Q9H0B3 1180 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 SEMA4AQ9H3S1 761 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 PTPN22Q9Y2R2 807 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 NOC2LQ9Y3T9 749 aaKnown RBP4.62□□□□□ -1.67
VPS35-203ENST00000562420 NR2E1Q9Y466 385 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 PPP2R3BQ9Y5P8 575 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 PHLDB1Q86UU1 1377 aa4.62□□□□□ -1.67
VPS35-203ENST00000562420 NPEPPSL1A6NEC2 478 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 PATE3B3GLJ2 98 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 K7ESM1 405 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 MATN2O00339 956 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 FSBPO95073 299 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 RPS19P39019 145 aaKnown RBP4.61□□□□□ -1.67
VPS35-203ENST00000562420 RRADP55042 308 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 ANTXR2P58335 489 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 KRTAP10-2P60368 255 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 MEF2AQ02078 507 aaPredicted RBP4.61□□□□□ -1.67
VPS35-203ENST00000562420 DUSP8Q13202 625 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 FSCN1Q16658 493 aaKnown RBP4.61□□□□□ -1.67
VPS35-203ENST00000562420 GJC2Q5T442 439 aaPredicted RBP4.61□□□□□ -1.67
VPS35-203ENST00000562420 UNQ6494/PRO21346Q6UXR6 183 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 DBX2Q6ZNG2 339 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 GGNQ86UU5 652 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 SLC41A1Q8IVJ1 513 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 ZCRB1Q8TBF4 217 aaKnown RBP4.61□□□□□ -1.67
VPS35-203ENST00000562420 RABGGTAQ92696 567 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 NOL10Q9BSC4 688 aaKnown RBP4.61□□□□□ -1.67
VPS35-203ENST00000562420 SLC6A15Q9H2J7 730 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 NELFAQ9H3P2 528 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 PUF60Q9UHX1 559 aaKnown RBP4.61□□□□□ -1.67
VPS35-203ENST00000562420 TMPRSS11EQ9UL52 423 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 ATP8A1Q9Y2Q0 1164 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 SLC30A1Q9Y6M5 507 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 ZNF536O15090 1300 aa4.61□□□□□ -1.67
VPS35-203ENST00000562420 A0A0A6YYK5 440 aaPredicted RBP4.6□□□□□ -1.67
VPS35-203ENST00000562420 PRSS38A1L453 326 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 GPR42O15529 346 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 SLC26A4O43511 780 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 APOL3O95236 402 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 CR2P20023 1033 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 ENPP1P22413 925 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 ADCY7P51828 1080 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 TMPRSS15P98073 1019 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 TBR1Q16650 682 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 SPATS1Q496A3 300 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 GLIPR1L2Q4G1C9 344 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 IQSEC1Q6DN90 963 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 HDGFL2Q7Z4V5 671 aaPredicted RBP4.6□□□□□ -1.67
VPS35-203ENST00000562420 GLB1L2Q8IW92 636 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 OR14C36Q8NHC7 312 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 RAX2Q96IS3 184 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 SOX7Q9BT81 388 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 C1QTNF3Q9BXJ4 246 aa4.6□□□□□ -1.67
VPS35-203ENST00000562420 PUS7LQ9H0K6 701 aaKnown RBP4.6□□□□□ -1.67
VPS35-203ENST00000562420 C14orf93Q9H972 538 aaKnown RBP4.6□□□□□ -1.67
VPS35-203ENST00000562420 TOPORSQ9NS56 1045 aaPredicted RBP4.6□□□□□ -1.67
VPS35-203ENST00000562420 DAPK3O43293 454 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 RAD17O75943 681 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 MTHFD2P13995 350 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 NRG3P56975 720 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 ADAM8P78325 824 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 MRPS9P82933 396 aaKnown RBP4.59□□□□□ -1.67
VPS35-203ENST00000562420 PLP2Q04941 152 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 PDCD1Q15116 288 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 ZNF662Q6ZS27 426 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 PRRT2Q7Z6L0 340 aaPredicted RBP4.59□□□□□ -1.67
VPS35-203ENST00000562420 DDX42Q86XP3 938 aaKnown RBP eCLIP4.59□□□□□ -1.67
VPS35-203ENST00000562420 LYSMD2Q8IV50 215 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 PLA2G15Q8NCC3 412 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 ATL2Q8NHH9 583 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 LMBR1Q8WVP7 490 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 GAB3Q8WWW8 586 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 SSH1Q8WYL5 1049 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 GCDHQ92947 438 aaPredicted RBP4.59□□□□□ -1.67
VPS35-203ENST00000562420 MS4A5Q9H3V2 200 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.59□□□□□ -1.67
VPS35-203ENST00000562420 PRSS50Q9UI38 385 aa4.59□□□□□ -1.67
VPS35-203ENST00000562420 C2orf78A6NCI8 922 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 ALG1L2C9J202 215 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 NRP1O14786 923 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 PCDH8O95206 1070 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 JUNP05412 331 aaKnown RBP4.58□□□□□ -1.68
VPS35-203ENST00000562420 VSIG10L2P0DP72 767 aa4.58□□□□□ -1.68
VPS35-203ENST00000562420 GAAP10253 952 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms