RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 FAM177A1Q8N128 213 aaPredicted RBP18.53■□□□□ 0.56
CLN3-208ENST00000561505 NECTIN4Q96NY8 510 aa18.53■□□□□ 0.56
CLN3-208ENST00000561505 SAMM50Q9Y512 469 aa18.53■□□□□ 0.56
CLN3-208ENST00000561505 RPS6KB1P23443 525 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 PDIA3P30101 505 aaKnown RBP18.52■□□□□ 0.56
CLN3-208ENST00000561505 PHKA2P46019 1235 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 POLGP54098 1239 aaPredicted RBP18.52■□□□□ 0.56
CLN3-208ENST00000561505 VCPP55072 806 aaKnown RBP18.52■□□□□ 0.56
CLN3-208ENST00000561505 BCAR1P56945 870 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 TBC1D8BQ0IIM8 1120 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 BLOC1S2Q6QNY1 142 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 MOXD1Q6UVY6 613 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 TRMT1LQ7Z2T5 733 aaKnown RBP18.52■□□□□ 0.56
CLN3-208ENST00000561505 HELQQ8TDG4 1101 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 RIPOR3Q96MK2 946 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 TEKT3Q9BXF9 490 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 C22orf23Q9BZE7 217 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 NR2E1Q9Y466 385 aa18.52■□□□□ 0.56
CLN3-208ENST00000561505 GAS7O60861 476 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 MAFO75444 373 aaPredicted RBP18.51■□□□□ 0.55
CLN3-208ENST00000561505 NPY5RQ15761 445 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 LRCH2Q5VUJ6 765 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 ZNF410Q86VK4 478 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 UBALD2Q8IYN6 164 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 SLC22A17Q8WUG5 538 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 JAKMIP1Q96N16 626 aaKnown RBP18.51■□□□□ 0.55
CLN3-208ENST00000561505 GCOM2Q9BZD3 368 aaPredicted RBP18.51■□□□□ 0.55
CLN3-208ENST00000561505 ZBP1Q9H171 429 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 IRF2BPLQ9H1B7 796 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 POMKQ9H5K3 350 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 VPS54Q9P1Q0 977 aa18.51■□□□□ 0.55
CLN3-208ENST00000561505 USP34Q70CQ2 3546 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 FGFR4P22455 802 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 ALDH7A1P49419 539 aaKnown RBP18.5■□□□□ 0.55
CLN3-208ENST00000561505 FGD1P98174 961 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 GIT2Q14161 759 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 LLGL2Q6P1M3 1020 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 DDX53Q86TM3 631 aaKnown RBP18.5■□□□□ 0.55
CLN3-208ENST00000561505 ZDHHC14Q8IZN3 488 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 DAGLBQ8NCG7 672 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 ETNPPLQ8TBG4 499 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 TBCKQ8TEA7 893 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 ZNF668Q96K58 619 aaPredicted RBP18.5■□□□□ 0.55
CLN3-208ENST00000561505 CDH22Q9UJ99 828 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 SORCS3Q9UPU3 1222 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 USTQ9Y2C2 406 aa18.5■□□□□ 0.55
CLN3-208ENST00000561505 C2CD4DB7Z1M9 353 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 PROB1E7EW31 1015 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 EPB41L2O43491 1005 aaKnown RBP18.49■□□□□ 0.55
CLN3-208ENST00000561505 ST18O60284 1047 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 CSDE1O75534 798 aaKnown RBP18.49■□□□□ 0.55
CLN3-208ENST00000561505 CXCL14O95715 111 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 CTSAP10619 480 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 SKIP12755 728 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 MTHFRP42898 656 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 AKAP17AQ02040 695 aaKnown RBP18.49■□□□□ 0.55
CLN3-208ENST00000561505 KIAA1841Q6NSI8 718 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 CES5AQ6NT32 575 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 TMEM173Q86WV6 379 aaPredicted RBP18.49■□□□□ 0.55
CLN3-208ENST00000561505 NLRP7Q8WX94 980 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 IGSF21Q96ID5 467 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 SLC26A6Q9BXS9 759 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 INO80BQ9C086 356 aaPredicted RBP18.49■□□□□ 0.55
CLN3-208ENST00000561505 DZANK1Q9NVP4 752 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 NAP1L2Q9ULW6 460 aaPredicted RBP18.49■□□□□ 0.55
CLN3-208ENST00000561505 PCDHA4Q9UN74 947 aa18.49■□□□□ 0.55
CLN3-208ENST00000561505 A0A087WZ62 844 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 GALTP07902 379 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 ANO5Q75V66 913 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 MIER3Q7Z3K6 550 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 MRPL10Q7Z7H8 261 aaKnown RBP18.48■□□□□ 0.55
CLN3-208ENST00000561505 VPS52Q8N1B4 723 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 KREMEN2Q8NCW0 462 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 GJA10Q969M2 543 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 TMEM169Q96HH4 297 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 FDXACB1Q9BRP7 624 aaPredicted RBP18.48■□□□□ 0.55
CLN3-208ENST00000561505 APOL5Q9BWW9 433 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 NRDE2Q9H7Z3 1164 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 IFT122Q9HBG6 1241 aa18.48■□□□□ 0.55
CLN3-208ENST00000561505 NT5C1B-RDH14C9J2C7 533 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 LILRB3O75022 631 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 OFD1O75665 1012 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 BRD1O95696 1058 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 PDGFBP01127 241 aaPredicted RBP18.47■□□□□ 0.55
CLN3-208ENST00000561505 SFPQP23246 707 aaKnown RBP eCLIP18.47■□□□□ 0.55
CLN3-208ENST00000561505 PSMA5P28066 241 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 DNM2P50570 870 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 RAB27AP51159 221 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 TOB2Q14106 344 aaPredicted RBP18.47■□□□□ 0.55
CLN3-208ENST00000561505 GALNT17Q6IS24 598 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 RNF169Q8NCN4 708 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 BCL7CQ8WUZ0 217 aaPredicted RBP18.47■□□□□ 0.55
CLN3-208ENST00000561505 VN1R3Q9BXE9 311 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 NCOA5Q9HCD5 579 aaKnown RBP18.47■□□□□ 0.55
CLN3-208ENST00000561505 FAM105AQ9NUU6 356 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 TBC1D13Q9NVG8 400 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 PPME1Q9Y570 386 aa18.47■□□□□ 0.55
CLN3-208ENST00000561505 ZFHX2Q9C0A1 2572 aaPredicted RBP18.47■□□□□ 0.55
CLN3-208ENST00000561505 TMEM150BA6NC51 233 aa18.46■□□□□ 0.55
CLN3-208ENST00000561505 MEIS3P2A8K0S8 358 aa18.46■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms