RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 ZNF296Q8WUU4 475 aaPredicted RBP11.33□□□□□ -0.6
USP3-219ENST00000561326 PSPC1Q8WXF1 523 aaKnown RBP11.33□□□□□ -0.6
USP3-219ENST00000561326 TMEM143Q96AN5 459 aa11.33□□□□□ -0.6
USP3-219ENST00000561326 TRIM44Q96DX7 344 aaPredicted RBP11.33□□□□□ -0.6
USP3-219ENST00000561326 PDLIM2Q96JY6 352 aa11.33□□□□□ -0.6
USP3-219ENST00000561326 CEP89Q96ST8 783 aa11.33□□□□□ -0.6
USP3-219ENST00000561326 STRA6Q9BX79 667 aa11.33□□□□□ -0.6
USP3-219ENST00000561326 GBP3Q9H0R5 595 aa11.33□□□□□ -0.6
USP3-219ENST00000561326 XPNPEP1Q9NQW7 623 aa11.33□□□□□ -0.6
USP3-219ENST00000561326 LIMA1Q9UHB6 759 aaKnown RBP11.33□□□□□ -0.6
USP3-219ENST00000561326 PHLPP2Q6ZVD8 1323 aa11.33□□□□□ -0.6
USP3-219ENST00000561326 IGKV6-21A0A0C4DH24 114 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 DENND3A2RUS2 1198 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 K7ERI5 159 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 N4BP3O15049 544 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 AP5Z1O43299 807 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 ADCY6O43306 1168 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 PPP1R37O75864 691 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 MYL3P08590 195 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 C6orf222P0C671 652 aaPredicted RBP11.32□□□□□ -0.6
USP3-219ENST00000561326 ZNF286BP0CG31 522 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 GNAT1P11488 350 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 PRKAR2AP13861 404 aaKnown RBP11.32□□□□□ -0.6
USP3-219ENST00000561326 ELNP15502 786 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 EFNA5P52803 228 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 CDC42EP1Q00587 391 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 STRN3Q13033 797 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 PPFIA1Q13136 1202 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 MYBPC2Q14324 1141 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 HSP90AA2PQ14568 343 aaPredicted RBP11.32□□□□□ -0.6
USP3-219ENST00000561326 NFIL3Q16649 462 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 ZCWPW2Q504Y3 356 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 METTL13Q8N6R0 699 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 SLAIN1Q8ND83 568 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 TMEM161BQ8NDZ6 487 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 TRPV1Q8NER1 839 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 PRPF31Q8WWY3 499 aaKnown RBP11.32□□□□□ -0.6
USP3-219ENST00000561326 FIZ1Q96SL8 496 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 FGFBP2Q9BYJ0 223 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 XPO4Q9C0E2 1151 aaKnown RBP11.32□□□□□ -0.6
USP3-219ENST00000561326 SUCLA2Q9P2R7 463 aaPredicted RBP11.32□□□□□ -0.6
USP3-219ENST00000561326 TBX20Q9UMR3 447 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 NRCAMQ92823 1304 aa11.32□□□□□ -0.6
USP3-219ENST00000561326 LRRIQ4A6NIV6 560 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 ZBTB42B2RXF5 422 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 MSCO60682 206 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 F2P00734 622 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 NR3C1P04150 777 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 PTGS1P23219 599 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 NR2F2P24468 414 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 HOXD13P35453 343 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 PSEN2P49810 448 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 SOX10P56693 466 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 CHMP4BP1P59074 171 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 C1QTNF8P60827 252 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 IGBP1P78318 339 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 POU5F1BQ06416 359 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 NR1I3Q14994 352 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 KRT31Q15323 416 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 GRIK4Q16099 956 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 KIAA0753Q2KHM9 967 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 CCDC40Q4G0X9 1142 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 IRF2BP1Q8IU81 584 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 ZBTB8OSQ8IWT0 167 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 TUBGCP2Q9BSJ2 902 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 MTG1Q9BT17 334 aaPredicted RBP11.31□□□□□ -0.6
USP3-219ENST00000561326 UPF3AQ9H1J1 476 aaKnown RBP11.31□□□□□ -0.6
USP3-219ENST00000561326 C2orf40Q9H1Z8 148 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 TMEM134Q9H6X4 195 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 METTL14Q9HCE5 456 aaKnown RBP11.31□□□□□ -0.6
USP3-219ENST00000561326 FRMD4BQ9Y2L6 1034 aa11.31□□□□□ -0.6
USP3-219ENST00000561326 A0A1B0GTH6 734 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 PES1O00541 588 aaKnown RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 EPB41P11171 864 aaKnown RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 PRKCSHP14314 528 aaPredicted RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 GLRA2P23416 452 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 COPB1P53618 953 aaKnown RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 NKX3-2P78367 333 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 BEX3Q00994 111 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 PPP2R3AQ06190 1150 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 LAMTOR4Q0VGL1 99 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 MFSD10Q14728 455 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 MTHFD1LQ6UB35 978 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 FRMD5Q7Z6J6 570 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 SLC9A9Q8IVB4 645 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 ZC3H3Q8IXZ2 948 aaKnown RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 ZNF710Q8N1W2 664 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 PCSK9Q8NBP7 692 aaKnown RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 BSNDQ8WZ55 320 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 KCNN1Q92952 543 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 BICD1Q96G01 975 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 CNOT6LQ96LI5 555 aaKnown RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 NAP1L5Q96NT1 182 aaPredicted RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 MAP7D2Q96T17 732 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 VPS16Q9H269 839 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 HMX1Q9NP08 348 aaPredicted RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 RTN4Q9NQC3 1192 aaKnown RBP11.3□□□□□ -0.6
USP3-219ENST00000561326 XPNPEP3Q9NQH7 507 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 ARHGAP28Q9P2N2 729 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 IMPACTQ9P2X3 320 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms