RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 HOXA7P31268 230 aaPredicted RBP12.27□□□□□ -0.45
CUX1-218ENST00000560541 DHX9Q08211 1270 aaKnown RBP12.27□□□□□ -0.45
CUX1-218ENST00000560541 SLC5A9Q2M3M2 681 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 TUBB8Q3ZCM7 444 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 C10orf76Q5T2E6 689 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 EPM2AIP1Q7L775 607 aaPredicted RBP12.27□□□□□ -0.45
CUX1-218ENST00000560541 NT5DC3Q86UY8 548 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 B4GALNT2Q8NHY0 566 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 LENG9Q96B70 501 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 LRRC45Q96CN5 670 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 TSPYL2Q9H2G4 693 aaPredicted RBP12.27□□□□□ -0.45
CUX1-218ENST00000560541 CNOT8Q9UFF9 292 aaKnown RBP12.27□□□□□ -0.45
CUX1-218ENST00000560541 PPP1R9AQ9ULJ8 1098 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 BTAF1O14981 1849 aa12.27□□□□□ -0.45
CUX1-218ENST00000560541 PDXKO00764 312 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 ATP2C2O75185 946 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 TRIM49P0CI25 452 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 TRIM49CP0CI26 452 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 EZH1Q92800 747 aaPredicted RBP12.26□□□□□ -0.45
CUX1-218ENST00000560541 SLC40A1Q9NP59 571 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 TYW1Q9NV66 732 aaKnown RBP12.26□□□□□ -0.45
CUX1-218ENST00000560541 ATP8A1Q9Y2Q0 1164 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 BTNL10A8MVZ5 291 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 MSH4O15457 936 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 LGR5O75473 907 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 FAM107AO95990 144 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 GYS1P13807 737 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 ZNF76P36508 570 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 CYP2J2P51589 502 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 JAM2P57087 298 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 ICA1Q05084 483 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 LAMB3Q13751 1172 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 SNCBQ16143 134 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 PDCD2Q16342 344 aaPredicted RBP12.26□□□□□ -0.45
CUX1-218ENST00000560541 QPCTQ16769 361 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 ARHGAP44Q17R89 818 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 KRT71Q3SY84 523 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 CAPRIN2Q6IMN6 1127 aaKnown RBP12.26□□□□□ -0.45
CUX1-218ENST00000560541 RDH13Q8NBN7 331 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 CYFIP2Q96F07 1278 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 KCNQ5Q9NR82 932 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 LRRN2O75325 713 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 BBOX1O75936 387 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 PRKCIP41743 596 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 MAGOHP61326 146 aaKnown RBP12.26□□□□□ -0.45
CUX1-218ENST00000560541 UBXN2AP68543 259 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 PLS1Q14651 629 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 CHADLQ6NUI6 762 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 AADACL2Q6P093 401 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 PALB2Q86YC2 1186 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 TPH2Q8IWU9 490 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 SPICE1Q8N0Z3 855 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 MYCT1Q8N699 235 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 SLC35G2Q8TBE7 412 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 MAGOHBQ96A72 148 aaKnown RBP12.26□□□□□ -0.45
CUX1-218ENST00000560541 NAP1L4Q99733 375 aaKnown RBP12.26□□□□□ -0.45
CUX1-218ENST00000560541 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.26□□□□□ -0.458e-7■■■■■ 92.8
CUX1-218ENST00000560541 TAS2R14Q9NYV8 317 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 CHORDC1Q9UHD1 332 aaPredicted RBP12.26□□□□□ -0.45
CUX1-218ENST00000560541 RABGAP1Q9Y3P9 1069 aa12.26□□□□□ -0.45
CUX1-218ENST00000560541 CYP3A7-CYP3A51PA0A087WV96 503 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 SMIM23A6NLE4 172 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 TGFB1I1O43294 461 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 CYP3A7P24462 503 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 RPL13P26373 211 aaKnown RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 STAT1P42224 750 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 SCNN1BP51168 640 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 SF3B2Q13435 895 aaKnown RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 GNPTABQ3T906 1256 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 MEX3CQ5U5Q3 659 aaKnown RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 APOBEC3HQ6NTF7 200 aaKnown RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 TMC3Q7Z5M5 1100 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 FAM186BQ8IYM0 893 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 CERKQ8TCT0 537 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 GLG1Q92896 1179 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 EIF2AK1Q9BQI3 630 aaKnown RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 ZC3H12CQ9C0D7 883 aaKnown RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 MYO3BQ8WXR4 1341 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 DDTLA6NHG4 134 aaPredicted RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 CES2O00748 559 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 TPP2P29144 1249 aaPredicted RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 IFFO1Q0D2I5 559 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 DRAP1Q14919 205 aaPredicted RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 SPRED3Q2MJR0 410 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 DCAF12L1Q5VU92 463 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 CDCA2Q69YH5 1023 aaPredicted RBP12.25□□□□□ -0.45
CUX1-218ENST00000560541 KIAA0825Q8IV33 1275 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 MDM1Q8TC05 714 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 ARHGEF26Q96DR7 871 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 TMOD4Q9NZQ9 345 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 SLC12A6Q9UHW9 1150 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 AMFRQ9UKV5 643 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 STXBP5LQ9Y2K9 1186 aa12.25□□□□□ -0.45
CUX1-218ENST00000560541 ADAMTSL1Q8N6G6 1762 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 G3V3G9 751 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 FAM13AO94988 1023 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 CERKLQ49MI3 558 aaPredicted RBP12.24□□□□□ -0.45
CUX1-218ENST00000560541 CBWD6Q4V339 395 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 CBWD3Q5JTY5 395 aa12.24□□□□□ -0.45
CUX1-218ENST00000560541 CBWD5Q5RIA9 395 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms