RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 MYL3P08590 195 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 GLRA2P23416 452 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 FKBP3Q00688 224 aaKnown RBP12.35□□□□□ -0.43
USP3-218ENST00000560202 SPAG1Q07617 926 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 MKRN4PQ13434 485 aaPredicted RBP12.35□□□□□ -0.43
USP3-218ENST00000560202 DRP2Q13474 957 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 PPP2R5AQ15172 486 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 EDRF1Q3B7T1 1238 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 LRRC71Q8N4P6 559 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 SLAIN1Q8ND83 568 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 TMEM161BQ8NDZ6 487 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 ASAP3Q8TDY4 903 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 EEF2KMTQ96G04 330 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 PDLIM2Q96JY6 352 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 KIFC3Q9BVG8 833 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 UPF3AQ9H1J1 476 aaKnown RBP12.35□□□□□ -0.43
USP3-218ENST00000560202 SPC25Q9HBM1 224 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 TYW1Q9NV66 732 aaKnown RBP12.35□□□□□ -0.43
USP3-218ENST00000560202 WBP1LQ9NX94 342 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 IFNKQ9P0W0 207 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 TRIM17Q9Y577 477 aa12.35□□□□□ -0.43
USP3-218ENST00000560202 MYADML2A6NDP7 307 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 KCNJ18B7U540 433 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 DYNC1I1O14576 645 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 MAGEB2O15479 319 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 TGFB1I1O43294 461 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 CALUO43852 315 aaPredicted RBP12.34□□□□□ -0.43
USP3-218ENST00000560202 KPNA6O60684 536 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 PGK1P00558 417 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 KLRC1P26715 233 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 NAMPTP43490 491 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 UBASH3AP57075 661 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 NKX3-2P78367 333 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 PPFIA1Q13136 1202 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 KCNJ12Q14500 433 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 MFSD10Q14728 455 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 GRIK4Q16099 956 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 KIAA0753Q2KHM9 967 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 TCP11X2Q5H9J9 407 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 GNASQ5JWF2 1037 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 EFCAB12Q6NXP0 572 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 LRRC55Q6ZSA7 311 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 FAM114A1Q8IWE2 563 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 RETREG2Q8NC44 543 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 PRPF31Q8WWY3 499 aaKnown RBP12.34□□□□□ -0.43
USP3-218ENST00000560202 HVCN1Q96D96 273 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 MRFAP1L1Q96HT8 127 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 ACCSQ96QU6 501 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 XPO4Q9C0E2 1151 aaKnown RBP12.34□□□□□ -0.43
USP3-218ENST00000560202 TMEM206Q9H813 350 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 MAGEC2Q9UBF1 373 aaPredicted RBP12.34□□□□□ -0.43
USP3-218ENST00000560202 LIMA1Q9UHB6 759 aaKnown RBP12.34□□□□□ -0.43
USP3-218ENST00000560202 ZMYM2Q9UBW7 1377 aa12.34□□□□□ -0.43
USP3-218ENST00000560202 ADGRA3Q8IWK6 1321 aa12.33□□□□□ -0.43
USP3-218ENST00000560202 DENND3A2RUS2 1198 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 H0YCG3 227 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 HAS3O00219 553 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 CBFA2T2O43439 604 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 INHAP05111 366 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 EEF1GP26641 437 aaKnown RBP12.33□□□□□ -0.44
USP3-218ENST00000560202 GRK4P32298 578 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 PSEN2P49810 448 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 DNM2P50570 870 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 CHMP4BP1P59074 171 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 PURAQ00577 322 aaKnown RBP12.33□□□□□ -0.44
USP3-218ENST00000560202 ADAM9Q13443 819 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 MTHFD1LQ6UB35 978 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 HS2ST1Q7LGA3 356 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 APTXQ7Z2E3 356 aaKnown RBP12.33□□□□□ -0.44
USP3-218ENST00000560202 CREBRFQ8IUR6 639 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 ZC3H3Q8IXZ2 948 aaKnown RBP12.33□□□□□ -0.44
USP3-218ENST00000560202 SYCP3Q8IZU3 236 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 METTL13Q8N6R0 699 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 ANKRD20A12PQ8NF67 263 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 PSPC1Q8WXF1 523 aaKnown RBP12.33□□□□□ -0.44
USP3-218ENST00000560202 ZBTB10Q96DT7 871 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 CEP63Q96MT8 703 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 CTAGE1Q96RT6 745 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 KATNAL1Q9BW62 490 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 GBP3Q9H0R5 595 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 IKZF4Q9H2S9 585 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 XPNPEP3Q9NQH7 507 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 ARHGAP28Q9P2N2 729 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 SUCLA2Q9P2R7 463 aaPredicted RBP12.33□□□□□ -0.44
USP3-218ENST00000560202 TBX20Q9UMR3 447 aa12.33□□□□□ -0.44
USP3-218ENST00000560202 RRN3P2A6NIE6 340 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 LRRC10BA6NIK2 292 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 LRRIQ4A6NIV6 560 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 CETN3O15182 167 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 ZEB2O60315 1214 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 ADAMTS4O75173 837 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 SMIM10L2AP0DMW4 78 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 SMIM10L2BP0DMW5 78 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 SCP2P22307 547 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 ABCD1P33897 745 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 CAPSQ13938 189 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 MXD4Q14582 209 aaPredicted RBP12.32□□□□□ -0.44
USP3-218ENST00000560202 KRT31Q15323 416 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 MARCH8Q5T0T0 291 aa12.32□□□□□ -0.44
USP3-218ENST00000560202 FILIP1Q7Z7B0 1213 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms