RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CCT2P78371 535 aaKnown RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 TCP10Q12799 353 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.82□□□□□ -1.48
LDLR-209ENST00000558528 KIF4BQ2VIQ3 1234 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 FAM47AQ5JRC9 791 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 GPATCH4Q5T3I0 446 aaKnown RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 HEATR6Q6AI08 1181 aaKnown RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 TATDN1Q6P1N9 297 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 LRFN4Q6PJG9 635 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 CYFIP1Q7L576 1253 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 SLC51AQ86UW1 340 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 KIF18BQ86Y91 864 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 TEX2Q8IWB9 1127 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 SLFN12Q8IYM2 578 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 STK11IPQ8N1F8 1099 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 CNTD1Q8N815 330 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 ENAHQ8N8S7 591 aaPredicted RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 NECAB1Q8N987 351 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 GSTCDQ8NEC7 633 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 GPBAR1Q8TDU6 330 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 CCDC12Q8WUD4 166 aaPredicted RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 NUP133Q8WUM0 1156 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 HPS1Q92902 700 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 DYNLL2Q96FJ2 89 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 SLC30A3Q99726 388 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 CORO1BQ9BR76 489 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 ORAI3Q9BRQ5 295 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 RNF26Q9BY78 433 aaPredicted RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 PRO3102Q9H379 93 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.82□□□□□ -1.48
LDLR-209ENST00000558528 VEZTQ9HBM0 779 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 TCF7L1Q9HCS4 588 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 DDX4Q9NQI0 724 aaKnown RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 ADARB2Q9NS39 739 aaKnown RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 NDFIP2Q9NV92 336 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 MTMR4Q9NYA4 1195 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 GPRC5DQ9NZD1 345 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 ORC3Q9UBD5 711 aaPredicted RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 KLHL3Q9UH77 587 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 TRHDEQ9UKU6 1024 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 CFAP45Q9UL16 551 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 PNMA8BQ9ULN7 279 aaPredicted RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 STX8Q9UNK0 236 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 CORINQ9Y5Q5 1042 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 EYSQ5T1H1 3165 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 PAPPA2Q9BXP8 1791 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 COL11A2P13942 1736 aaPredicted RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 PRUNE2Q8WUY3 3088 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 PIEZO1Q92508 2521 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 CYP2D7A0A087X1C5 515 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 PTPDC1A2A3K4 754 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 ZBTB42B2RXF5 422 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 H3BRJ5 948 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 hCG_1984214I3L0E3 225 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 MPHOSPH10O00566 681 aaKnown RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 NOP56O00567 594 aaKnown RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 PRODHO43272 600 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 PRPF3O43395 683 aaKnown RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 F2P00734 622 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 PGRP06401 933 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 ASNSP08243 561 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 PARP1P09874 1014 aaKnown RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 ZSCAN22P10073 491 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 CYP2D6P10635 497 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 ZSCAN20P17040 1043 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 BPIP17213 487 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 VCAM1P19320 739 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 NF2P35240 595 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 SCNN1BP51168 640 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 TMPRSS15P98073 1019 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 KIF23Q02241 960 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 TROAPQ12815 778 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 NFIAQ12857 509 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 ABCB5Q2M3G0 1257 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 GRAMD1BQ3KR37 738 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 MINDY4Q4G0A6 757 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 ASPRV1Q53RT3 343 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 LCE2DQ5TA82 110 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 GALNT17Q6IS24 598 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 POMZP3Q6PJE2 187 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 USP50Q70EL3 339 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 MAMDC2Q7Z304 686 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 BRAPQ7Z569 592 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 ZNF227Q86WZ6 799 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 MICU3Q86XE3 530 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 ZNF713Q8N859 430 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 NSUN7Q8NE18 718 aaKnown RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 JPH3Q8WXH2 748 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 WNT8BQ93098 351 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 DCPSQ96C86 337 aaKnown RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 C8orf76Q96K31 380 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 ZNF396Q96N95 335 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 UBE2OQ9C0C9 1292 aaKnown RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 SCAND2PQ9GZW5 306 aaPredicted RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 GLT8D2Q9H1C3 349 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 IGFLR1Q9H665 355 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 INCENPQ9NQS7 918 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 CHST12Q9NRB3 414 aa5.81□□□□□ -1.48
LDLR-209ENST00000558528 DNAJB12Q9NXW2 375 aaKnown RBP5.81□□□□□ -1.48
LDLR-209ENST00000558528 FRRS1LQ9P0K9 344 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms