RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 HPS3Q969F9 1004 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 CCDC47Q96A33 483 aaKnown RBP10.63□□□□□ -0.71
CUX1-216ENST00000558469 IFT74Q96LB3 600 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 GSDMAQ96QA5 445 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 MAP7D2Q96T17 732 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 PARVGQ9HBI0 331 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 EXOC1Q9NV70 894 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 TBC1D7Q9P0N9 293 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 NOD1Q9Y239 953 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 MROH7Q68CQ1 1323 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 FRMD3A2A2Y4 597 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 CCDC169A6NNP5 214 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 ASAP2O43150 1006 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 PQBP1O60828 265 aaKnown RBP10.62□□□□□ -0.71
CUX1-216ENST00000558469 LETM1O95202 739 aaPredicted RBP10.62□□□□□ -0.71
CUX1-216ENST00000558469 SRGAP2CP0DJJ0 459 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 PLS3P13797 630 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 GLRA2P23416 452 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 ZNF131P52739 623 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 PEX3P56589 373 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 TMEM62Q0P6H9 643 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 LAMTOR4Q0VGL1 99 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 PTK7Q13308 1070 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 MXD4Q14582 209 aaPredicted RBP10.62□□□□□ -0.71
CUX1-216ENST00000558469 KCNB1Q14721 858 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 NT5DC1Q5TFE4 455 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 TAF2Q6P1X5 1199 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 RBM43Q6ZSC3 357 aaKnown RBP10.62□□□□□ -0.71
CUX1-216ENST00000558469 BSNDQ8WZ55 320 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 ZNF668Q96K58 619 aaPredicted RBP10.62□□□□□ -0.71
CUX1-216ENST00000558469 CTAGE1Q96RT6 745 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 PPP1R16BQ96T49 567 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 GZF1Q9H116 711 aaPredicted RBP10.62□□□□□ -0.71
CUX1-216ENST00000558469 SLC39A2Q9NP94 309 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 RMND1Q9NWS8 449 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 LARSQ9P2J5 1176 aaKnown RBP10.62□□□□□ -0.71
CUX1-216ENST00000558469 METRNQ9UJH8 293 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 MAN1B1Q9UKM7 699 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 SCN5AQ14524 2016 aa10.62□□□□□ -0.71
CUX1-216ENST00000558469 SYCE3A1L190 88 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 LRRIQ4A6NIV6 560 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 CCDC85CA6NKD9 419 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 DCDC2CA8MYV0 355 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 TLR3O15455 904 aaKnown RBP10.61□□□□□ -0.71
CUX1-216ENST00000558469 RHOBTB3O94955 611 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 C7P10643 843 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 NMT1P30419 496 aaKnown RBP10.61□□□□□ -0.71
CUX1-216ENST00000558469 THPOP40225 353 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 NPTX2P47972 431 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 SMTNP53814 917 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 RTP1P59025 263 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 NLRP11P59045 1033 aaKnown RBP10.61□□□□□ -0.71
CUX1-216ENST00000558469 PSMD2Q13200 908 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 DMP1Q13316 513 aaPredicted RBP10.61□□□□□ -0.71
CUX1-216ENST00000558469 CAPSQ13938 189 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 MORC3Q14149 939 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 TFDP1Q14186 410 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 PPP2R5AQ15172 486 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 LRRC26Q2I0M4 334 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 ZSCAN23Q3MJ62 389 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 TRIM60Q495X7 471 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 FAM26FQ5R3K3 315 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 C1orf53Q5VUE5 145 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 SASS6Q6UVJ0 657 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 RSPH3Q86UC2 560 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 FAM178BQ8IXR5 827 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 FAM126BQ8IXS8 530 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 TNS4Q8IZW8 715 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 NME8Q8N427 588 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 NLRP7Q8WX94 980 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 WNT8BQ93098 351 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 NLRP4Q96MN2 994 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 SCLT1Q96NL6 688 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 MRPL44Q9H9J2 332 aaKnown RBP10.61□□□□□ -0.71
CUX1-216ENST00000558469 C17orf75Q9HAS0 396 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 KMT5AQ9NQR1 393 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 SEL1LQ9UBV2 794 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 ATP11BQ9Y2G3 1177 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 TANC1Q9C0D5 1861 aa10.61□□□□□ -0.71
CUX1-216ENST00000558469 K7ENM7 598 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 SLC16A4O15374 487 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 GPR32O75388 356 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 CD4P01730 458 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 NAMPTP43490 491 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 GPC3P51654 580 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 CDC42EP1Q00587 391 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 TLE2Q04725 743 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 EHHADHQ08426 723 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 STK4Q13043 487 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 SNX17Q15036 470 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 KIZQ2M2Z5 673 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 ANKRD33Q7Z3H0 272 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 UBE2Q1Q7Z7E8 422 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 SMYD4Q8IYR2 804 aaPredicted RBP10.6□□□□□ -0.71
CUX1-216ENST00000558469 RNF149Q8NC42 400 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 DEPTORQ8TB45 409 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 DHX38Q92620 1227 aaKnown RBP10.6□□□□□ -0.71
CUX1-216ENST00000558469 NTPCRQ9BSD7 190 aaKnown RBP10.6□□□□□ -0.71
CUX1-216ENST00000558469 KIFC3Q9BVG8 833 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 FGFBP2Q9BYJ0 223 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms