RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 DUSP9Q99956 384 aaKnown RBP11.79□□□□□ -0.52
USP3-206ENST00000558157 ECT2Q9H8V3 914 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 MAGEF1Q9HAY2 307 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 FAM114A2Q9NRY5 505 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 GGA3Q9NZ52 723 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 SALL4Q9UJQ4 1053 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 RPS6KL1Q9Y6S9 549 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 F8VZ95 297 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 IGF2BP3O00425 579 aaKnown RBP eCLIP11.79□□□□□ -0.52
USP3-206ENST00000558157 NUDT17P0C025 328 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 ATP6V1C1P21283 382 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 KCNJ2P63252 427 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 JAG1P78504 1218 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 PTGDRQ13258 359 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 COBLL1Q53SF7 1204 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 MIGA2Q7L4E1 593 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 SESTD1Q86VW0 696 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 LRRC47Q8N1G4 583 aaKnown RBP11.79□□□□□ -0.52
USP3-206ENST00000558157 STAG2Q8N3U4 1231 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 CCDC82Q8N4S0 544 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 EPAS1Q99814 870 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 SLITRK6Q9H5Y7 841 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 ADAM22Q9P0K1 906 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 AGAP1Q9UPQ3 857 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 ATAD5Q96QE3 1844 aa11.79□□□□□ -0.52
USP3-206ENST00000558157 BTNL10A8MVZ5 291 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 OAS1P00973 400 aaKnown RBP11.78□□□□□ -0.52
USP3-206ENST00000558157 CHN1P15882 459 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 KLK7P49862 253 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 GRM4Q14833 912 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 ABCB5Q2M3G0 1257 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 FAM133BQ5BKY9 247 aaKnown RBP11.78□□□□□ -0.52
USP3-206ENST00000558157 TMTC3Q6ZXV5 915 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 ASRGL1Q7L266 308 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 TRIM74Q86UV6 250 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 TRIM73Q86UV7 250 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 APOBEC3FQ8IUX4 373 aaKnown RBP11.78□□□□□ -0.52
USP3-206ENST00000558157 FBF1Q8TES7 1133 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 P2RX5Q93086 422 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 STMN4Q9H169 189 aaPredicted RBP11.78□□□□□ -0.52
USP3-206ENST00000558157 VCXQ9H320 206 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 ADARB2Q9NS39 739 aaKnown RBP11.78□□□□□ -0.52
USP3-206ENST00000558157 MAPK8IP1Q9UQF2 711 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 SIK3Q9Y2K2 1263 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 MYH10P35580 1976 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 CCDC169A6NNP5 214 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 BACH1O14867 736 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 SNX3O60493 162 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 PALMO75781 387 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 SUN1O94901 812 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 UBOX5O94941 541 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 TTLL1O95922 423 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 GH2P01242 217 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 GSTA2P09210 222 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 ACADSP16219 412 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 STAT6P42226 847 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 LRRC23Q53EV4 343 aaPredicted RBP11.78□□□□□ -0.52
USP3-206ENST00000558157 ANO7Q6IWH7 933 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 TMEM179Q6ZVK1 233 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 TRIM4Q9C037 500 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 DEFB129Q9H1M3 183 aa11.78□□□□□ -0.52
USP3-206ENST00000558157 USP15Q9Y4E8 981 aaPredicted RBP11.78□□□□□ -0.52
USP3-206ENST00000558157 CNTNAP5Q8WYK1 1306 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 TBC1D12O60347 775 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 GNAZP19086 355 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 HOXA7P31268 230 aaPredicted RBP11.77□□□□□ -0.52
USP3-206ENST00000558157 KLC1Q07866 573 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 FUT2Q10981 343 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 TRADDQ15628 312 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 NUGGCQ68CJ6 796 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 LRRC34Q8IZ02 419 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 ATL2Q8NHH9 583 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 SH3TC2Q8TF17 1288 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 TNFRSF25Q93038 417 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 RBM41Q96IZ5 413 aaKnown RBP11.77□□□□□ -0.52
USP3-206ENST00000558157 TRIM7Q9C029 511 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 CUEDC2Q9H467 287 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 DISC1Q9NRI5 854 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 INTS9Q9NV88 658 aaKnown RBP11.77□□□□□ -0.52
USP3-206ENST00000558157 MAD2L2Q9UI95 211 aa11.77□□□□□ -0.52
USP3-206ENST00000558157 DCDC2CA8MYV0 355 aa11.77□□□□□ -0.53
USP3-206ENST00000558157 KLRC4O43908 158 aa11.77□□□□□ -0.53
USP3-206ENST00000558157 AGTP01019 485 aa11.77□□□□□ -0.53
USP3-206ENST00000558157 KRT16P08779 473 aa11.77□□□□□ -0.53
USP3-206ENST00000558157 VWA3BQ502W6 1294 aa11.77□□□□□ -0.53
USP3-206ENST00000558157 DPY19L2Q6NUT2 758 aa11.77□□□□□ -0.53
USP3-206ENST00000558157 SRBD1Q8N5C6 995 aaKnown RBP11.77□□□□□ -0.53
USP3-206ENST00000558157 ELAC2Q9BQ52 826 aaKnown RBP11.77□□□□□ -0.53
USP3-206ENST00000558157 ABCF3Q9NUQ8 709 aa11.77□□□□□ -0.53
USP3-206ENST00000558157 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.77□□□□□ -0.53
USP3-206ENST00000558157 PRPF3O43395 683 aaKnown RBP11.76□□□□□ -0.53
USP3-206ENST00000558157 BUB1O43683 1085 aa11.76□□□□□ -0.53
USP3-206ENST00000558157 KIF4AO95239 1232 aa11.76□□□□□ -0.53
USP3-206ENST00000558157 FGFR1OPO95684 399 aaKnown RBP11.76□□□□□ -0.53
USP3-206ENST00000558157 EEF2P13639 858 aaKnown RBP11.76□□□□□ -0.53
USP3-206ENST00000558157 CCNB1P14635 433 aa11.76□□□□□ -0.53
USP3-206ENST00000558157 CDC25CP30307 473 aa11.76□□□□□ -0.53
USP3-206ENST00000558157 ZNF174Q15697 407 aa11.76□□□□□ -0.53
USP3-206ENST00000558157 PARP6Q2NL67 630 aa11.76□□□□□ -0.53
USP3-206ENST00000558157 TSNAXIP1Q2TAA8 658 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms