RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 TRIM51Q9BSJ1 452 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 TAOK3Q9H2K8 898 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 CD248Q9HCU0 757 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 TUFT1Q9NNX1 390 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 NYAP2Q9P242 653 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 PPP1R9AQ9ULJ8 1098 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 PCDHB13Q9Y5F0 798 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 QSER1Q2KHR3 1735 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 CFAP73A6NFT4 308 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 SPDYE3A6NKU9 549 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 F8W031 263 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-231ENST00000557433 KIAA0391O15091 583 aaKnown RBP17.6■□□□□ 0.41
SHMT2-231ENST00000557433 RGS16O15492 202 aaPredicted RBP17.6■□□□□ 0.41
SHMT2-231ENST00000557433 TGFB1I1O43294 461 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 PPIP5K2O43314 1243 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 CAND2O75155 1236 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 MMEP08473 750 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 NF2P35240 595 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 DCAF12L1Q5VU92 463 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 HS2ST1Q7LGA3 356 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 LENG9Q96B70 501 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 RPS6KC1Q96S38 1066 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 AMNQ9BXJ7 453 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 EPB41L4BQ9H329 900 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 OSGEPQ9NPF4 335 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 SAMD15Q9P1V8 674 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 PHF20L1A8MW92 1017 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 DCDC2CA8MYV0 355 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 FAM13AO94988 1023 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 CYP3A4P08684 503 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 VCAM1P19320 739 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 MSL1Q68DK7 614 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 TAOK1Q7L7X3 1001 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 BHMT2Q9H2M3 363 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 KCND2Q9NZV8 630 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 APEX2Q9UBZ4 518 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 PNMA2Q9UL42 364 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 FRMD4BQ9Y2L6 1034 aa17.6■□□□□ 0.41
SHMT2-231ENST00000557433 LOC102724159A0A0B4J2E5 919 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 CHN1P15882 459 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 KCNQ4P56696 695 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 PRPF4BQ13523 1007 aaKnown RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 RIPK1Q13546 671 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 PWP2Q15269 919 aaKnown RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 ZDHHC24Q6UX98 284 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 TBC1D16Q8TBP0 767 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 ATXN2LQ8WWM7 1075 aaKnown RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 ROPN1BQ9BZX4 212 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 COA1Q9GZY4 146 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 ROPN1Q9HAT0 212 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 HAUS2Q9NVX0 235 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 CCNL1Q9UK58 526 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 VAV3Q9UKW4 847 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 TRPC6Q9Y210 931 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 MEIS1O00470 390 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 BCRP11274 1271 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 CTNNA2P26232 953 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 PTPROQ16827 1216 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 TRAPPC3LQ5T215 181 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 MFSD5Q6N075 450 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 RINT1Q6NUQ1 792 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 GJB7Q6PEY0 223 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 CRELD2Q6UXH1 353 aaPredicted RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 CLEC10AQ8IUN9 316 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 SLC9A9Q8IVB4 645 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 CCHCR1Q8TD31 782 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 EIF2AK1Q9BQI3 630 aaKnown RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 RUSC1Q9BVN2 902 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 INTS2Q9H0H0 1204 aaKnown RBP17.59■□□□□ 0.41
SHMT2-231ENST00000557433 DMAC2Q9NW81 257 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 SLC12A4Q9UP95 1085 aa17.59■□□□□ 0.41
SHMT2-231ENST00000557433 ZMYM2Q9UBW7 1377 aa17.58■□□□□ 0.41
SHMT2-231ENST00000557433 MPHOSPH10O00566 681 aaKnown RBP17.58■□□□□ 0.4
SHMT2-231ENST00000557433 CLIC2O15247 247 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 PTGIRP43119 386 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 TRAF1Q13077 416 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 TNFAIP8L3Q5GJ75 292 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 SMIM5Q71RC9 77 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 CYFIP1Q7L576 1253 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 TRIM31Q9BZY9 425 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 ATP6V0A4Q9HBG4 840 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 PARVGQ9HBI0 331 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 GOPCQ9HD26 462 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 DDX4Q9NQI0 724 aaKnown RBP17.58■□□□□ 0.4
SHMT2-231ENST00000557433 INTS9Q9NV88 658 aaKnown RBP17.58■□□□□ 0.4
SHMT2-231ENST00000557433 ODF2LQ9ULJ1 636 aa17.58■□□□□ 0.4
SHMT2-231ENST00000557433 TPX2Q9ULW0 747 aaKnown RBP17.58■□□□□ 0.4
SHMT2-231ENST00000557433 P4HA2O15460 535 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 MTA2O94776 668 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 ALAS1P13196 640 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 RARGP13631 454 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 ADRA2BP18089 450 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 HOXA10P31260 410 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-231ENST00000557433 ELF1P32519 619 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 PLTPP55058 493 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 CYP1B1Q16678 543 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 SLFN13Q68D06 897 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 PRR5LQ6MZQ0 368 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 DNAAF5Q86Y56 855 aa17.57■□□□□ 0.4
SHMT2-231ENST00000557433 PROCA1Q8NCQ7 364 aaPredicted RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms