RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 CCDC196A0A1B0GTZ2 297 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 SMCO2A6NFE2 343 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 SPDYE3A6NKU9 549 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 C9IYK1 514 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 FIBPO43427 364 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 SP9P0CG40 484 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 PCNX4Q63HM2 1172 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 LARP1BQ659C4 914 aaKnown RBP14.11□□□□□ -0.15
SHMT2-230ENST00000557427 TYW1BQ6NUM6 668 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 NLRX1Q86UT6 975 aa14.11□□□□□ -0.15
SHMT2-230ENST00000557427 CELF4Q9BZC1 486 aaKnown RBP14.11□□□□□ -0.15
SHMT2-230ENST00000557427 PUF60Q9UHX1 559 aaKnown RBP14.11□□□□□ -0.15
SHMT2-230ENST00000557427 DBR1Q9UK59 544 aaKnown RBP14.11□□□□□ -0.15
SHMT2-230ENST00000557427 ATRXP46100 2492 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 DENND4AQ7Z401 1863 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 ATP9AO75110 1047 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 STAM2O75886 525 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 LAG3P18627 525 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 PDIA3P30101 505 aaKnown RBP14.1□□□□□ -0.15
SHMT2-230ENST00000557427 NFX1Q12986 1120 aaKnown RBP14.1□□□□□ -0.15
SHMT2-230ENST00000557427 STK3Q13188 491 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 COL9A2Q14055 689 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-230ENST00000557427 ATAT1Q5SQI0 421 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 TMC7Q7Z402 723 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 PHKBQ93100 1093 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 PGBD1Q96JS3 809 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 SENP7Q9BQF6 1050 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 KCNK12Q9HB15 430 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 CDHR5Q9HBB8 845 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 RIC8AQ9NPQ8 531 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 RGS18Q9NS28 235 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 RNF216Q9NWF9 866 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-230ENST00000557427 PKD2L1Q9P0L9 805 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 DLGAP2Q9P1A6 1054 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 FBXL21Q9UKT6 434 aa14.1□□□□□ -0.15
SHMT2-230ENST00000557427 INSRRP14616 1297 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 ADCY7P51828 1080 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 RCAN1P53805 252 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 HMGN5P82970 282 aaKnown RBP14.09□□□□□ -0.15
SHMT2-230ENST00000557427 AKAP17AQ02040 695 aaKnown RBP14.09□□□□□ -0.15
SHMT2-230ENST00000557427 SCRN1Q12765 414 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 XRRA1Q6P2D8 792 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 KCNT2Q6UVM3 1135 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 GPT2Q8TD30 523 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 TRAPPC12Q8WVT3 735 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 TMEM40Q8WWA1 233 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 PCYT2Q99447 389 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 ADAM2Q99965 735 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 NCOA5Q9HCD5 579 aaKnown RBP14.09□□□□□ -0.15
SHMT2-230ENST00000557427 RNF19AQ9NV58 838 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 BARHL2Q9NY43 387 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 ERAP1Q9NZ08 941 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 NOC2LQ9Y3T9 749 aaKnown RBP14.09□□□□□ -0.15
SHMT2-230ENST00000557427 KIF3AQ9Y496 699 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 KDM3AQ9Y4C1 1321 aa14.09□□□□□ -0.15
SHMT2-230ENST00000557427 DCDC2BA2VCK2 349 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 VPS37CA5D8V6 355 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-230ENST00000557427 POTEMA6NI47 508 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 PRPF3O43395 683 aaKnown RBP14.08□□□□□ -0.16
SHMT2-230ENST00000557427 DCNP07585 359 aaKnown RBP14.08□□□□□ -0.16
SHMT2-230ENST00000557427 CFHP08603 1231 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 EPCAMP16422 314 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 NCLP19338 710 aaKnown RBP14.08□□□□□ -0.16
SHMT2-230ENST00000557427 ZNF445P59923 1031 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 FAM189BP81408 668 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 PFKFB3Q16875 520 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-230ENST00000557427 KIAA0319Q5VV43 1072 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 JAKMIP3Q5VZ66 844 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 POTEGQ6S5H5 508 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 SLC24A5Q71RS6 500 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 MAML2Q8IZL2 1156 aaPredicted RBP14.08□□□□□ -0.16
SHMT2-230ENST00000557427 NSUN7Q8NE18 718 aaKnown RBP14.08□□□□□ -0.16
SHMT2-230ENST00000557427 CHAMP1Q96JM3 812 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 CASD1Q96PB1 797 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 SLC26A6Q9BXS9 759 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 WNT16Q9UBV4 365 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 PCDHA2Q9Y5H9 948 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 CACNA1IQ9P0X4 2223 aa14.08□□□□□ -0.16
SHMT2-230ENST00000557427 STK25O00506 426 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 ADRB1P08588 477 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 KCNA2P16389 499 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 ITGB5P18084 799 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 KRT76Q01546 638 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 SMC1AQ14683 1233 aaKnown RBP14.07□□□□□ -0.16
SHMT2-230ENST00000557427 SPECC1Q5M775 1068 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 TMC5Q6UXY8 1006 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 SLC22A17Q8WUG5 538 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 RSAD2Q8WXG1 361 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 SEPT1Q8WYJ6 367 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 C1orf112Q9NSG2 853 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 UBIAD1Q9Y5Z9 338 aa14.07□□□□□ -0.16
SHMT2-230ENST00000557427 RRN3P2A6NIE6 340 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 hCG_1984214I3L0E3 225 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 M0QZ92 97 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 ADAMTS3O15072 1205 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 JAK2O60674 1132 aa14.06□□□□□ -0.16
SHMT2-230ENST00000557427 N4BP1O75113 896 aaKnown RBP14.06□□□□□ -0.16
SHMT2-230ENST00000557427 FOSP01100 380 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-230ENST00000557427 RPLP2P05387 115 aaKnown RBP14.06□□□□□ -0.16
SHMT2-230ENST00000557427 GLULP15104 373 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms