RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 MTIF3Q9H2K0 278 aaKnown RBP12.08□□□□□ -0.48
SHMT2-218ENST00000555213 MAGEF1Q9HAY2 307 aa12.08□□□□□ -0.48
SHMT2-218ENST00000555213 IL23AQ9NPF7 189 aa12.08□□□□□ -0.48
SHMT2-218ENST00000555213 KBTBD4Q9NVX7 518 aa12.08□□□□□ -0.48
SHMT2-218ENST00000555213 USP25Q9UHP3 1055 aa12.08□□□□□ -0.48
SHMT2-218ENST00000555213 PCDHA5Q9Y5H7 936 aa12.08□□□□□ -0.48
SHMT2-218ENST00000555213 COL4A3BPQ9Y5P4 624 aa12.08□□□□□ -0.48
SHMT2-218ENST00000555213 LTBP2Q14767 1821 aa12.08□□□□□ -0.48
SHMT2-218ENST00000555213 ARID2Q68CP9 1835 aa12.08□□□□□ -0.48
SHMT2-218ENST00000555213 TBCAO75347 108 aaKnown RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 PHKA2P46019 1235 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 GPC3P51654 580 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 CRYBB1P53674 252 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 NLRP11P59045 1033 aaKnown RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 MGAT3Q09327 533 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 DPYDQ12882 1025 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 PPP2R5AQ15172 486 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 TSHZ1Q6ZSZ6 1077 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 FAM43BQ6ZT52 329 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 DEFB128Q7Z7B8 93 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 GPBP1Q86WP2 473 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 SYT2Q8N9I0 419 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 PRPF31Q8WWY3 499 aaKnown RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 SEPT8Q92599 483 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 APBB2Q92870 758 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 CCDC34Q96HJ3 373 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 IFT74Q96LB3 600 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 PPP1R16BQ96T49 567 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 GCOM2Q9BZD3 368 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 INO80BQ9C086 356 aaPredicted RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 UBE2OQ9C0C9 1292 aaKnown RBP12.07□□□□□ -0.48
SHMT2-218ENST00000555213 LRRC27Q9C0I9 530 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 TSPY26PQ9H489 355 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 XPNPEP1Q9NQW7 623 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 SQORQ9Y6N5 450 aa12.07□□□□□ -0.48
SHMT2-218ENST00000555213 CEP290O15078 2479 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-218ENST00000555213 EFCAB14O75071 495 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 CHRNA1P02708 482 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 GHRP10912 638 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 SFPQP23246 707 aaKnown RBP eCLIP12.06□□□□□ -0.48
SHMT2-218ENST00000555213 GUCY2CP25092 1073 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 SLC12A3P55017 1021 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 AMPD3Q01432 767 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 LAMTOR4Q0VGL1 99 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 PAK2Q13177 524 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 DMP1Q13316 513 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-218ENST00000555213 MKRN4PQ13434 485 aaPredicted RBP12.06□□□□□ -0.48
SHMT2-218ENST00000555213 DRP2Q13474 957 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 DHX8Q14562 1220 aaKnown RBP12.06□□□□□ -0.48
SHMT2-218ENST00000555213 MCM6Q14566 821 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 POSTNQ15063 836 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 FBXO47Q5MNV8 452 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 RINT1Q6NUQ1 792 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 KANK3Q6NY19 840 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 CNKSR3Q6P9H4 555 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 TRAF7Q6Q0C0 670 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 SV2BQ7L1I2 683 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 MAEAQ7L5Y9 396 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 CEP57L1Q8IYX8 460 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 OSMRQ99650 979 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 RUSC1Q9BVN2 902 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 IFIH1Q9BYX4 1025 aaKnown RBP12.06□□□□□ -0.48
SHMT2-218ENST00000555213 KCNG1Q9UIX4 513 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 ODF2LQ9ULJ1 636 aa12.06□□□□□ -0.48
SHMT2-218ENST00000555213 GOLGA6L3A6NEY3 463 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 GPR182O15218 404 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 KLRC4O43908 158 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 NBNO60934 754 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 HIP1RO75146 1068 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 GPR32O75388 356 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 RPS6KA5O75582 802 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 BAIAP3O94812 1187 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 CXCL10P02778 98 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 SRGAP2CP0DJJ0 459 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 DARSP14868 501 aaKnown RBP12.05□□□□□ -0.48
SHMT2-218ENST00000555213 EIF4BP23588 611 aaKnown RBP12.05□□□□□ -0.48
SHMT2-218ENST00000555213 ARL2P36404 184 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 AFMP43652 599 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 FXR1P51114 621 aaKnown RBP eCLIP12.05□□□□□ -0.48
SHMT2-218ENST00000555213 NLRP12P59046 1061 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 CUL4BQ13620 913 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 LPIN1Q14693 890 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 MBTPS1Q14703 1052 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 C1orf186Q6ZWK4 172 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 ZBTB8OSQ8IWT0 167 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 RNF149Q8NC42 400 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 DEPTORQ8TB45 409 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 ASAP3Q8TDY4 903 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 ADAMTS10Q9H324 1103 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 C17orf75Q9HAS0 396 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 GPRC5CQ9NQ84 441 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 MAN1B1Q9UKM7 699 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 PHLPP2Q6ZVD8 1323 aa12.05□□□□□ -0.48
SHMT2-218ENST00000555213 TRIP12Q14669 1992 aaPredicted RBP12.05□□□□□ -0.48
SHMT2-218ENST00000555213 A0A087WZ62 844 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 LRRIQ4A6NIV6 560 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 H0YCG3 227 aa12.04□□□□□ -0.48
SHMT2-218ENST00000555213 GTPBP6O43824 516 aaPredicted RBP12.04□□□□□ -0.48
SHMT2-218ENST00000555213 FAM13AO94988 1023 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms