RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 TOB1P50616 345 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-213ENST00000554600 LAMTOR4Q0VGL1 99 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 PTGDRQ13258 359 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 RILPL1Q5EBL4 403 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 FAM43BQ6ZT52 329 aaPredicted RBP11.88□□□□□ -0.51
SHMT2-213ENST00000554600 CATSPER3Q86XQ3 398 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 NACC1Q96RE7 527 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 RAB34Q9BZG1 259 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 FOXD4L1Q9NU39 408 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 LRWD1Q9UFC0 647 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 PIN4Q9Y237 131 aaKnown RBP11.88□□□□□ -0.51
SHMT2-213ENST00000554600 RWDD3Q9Y3V2 267 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 PRUNE2Q8WUY3 3088 aa11.88□□□□□ -0.51
SHMT2-213ENST00000554600 DGAT1O75907 488 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 BMPR1AP36894 532 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 PHKA2P46019 1235 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 DSC3Q14574 896 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 FAM102BQ5T8I3 360 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 HAUS3Q68CZ6 603 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 TWF2Q6IBS0 349 aaKnown RBP11.87□□□□□ -0.51
SHMT2-213ENST00000554600 POTEGQ6S5H5 508 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 MAEAQ7L5Y9 396 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 FERMT3Q86UX7 667 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 CMTR2Q8IYT2 770 aaKnown RBP11.87□□□□□ -0.51
SHMT2-213ENST00000554600 ABI1Q8IZP0 508 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 RNF149Q8NC42 400 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 ZNF689Q96CS4 500 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-213ENST00000554600 POLR3CQ9BUI4 534 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-213ENST00000554600 RC3H2Q9HBD1 1191 aaKnown RBP11.87□□□□□ -0.51
SHMT2-213ENST00000554600 TMEM161AQ9NX61 479 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 DACT1Q9NYF0 836 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 THEGQ9P2T0 379 aa11.87□□□□□ -0.51
SHMT2-213ENST00000554600 MRPL42Q9Y6G3 142 aaKnown RBP11.87□□□□□ -0.51
SHMT2-213ENST00000554600 ARHGEF35A5YM69 484 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 H3BNC9 293 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 ASAP2O43150 1006 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 SPATA31C1P0DKV0 1188 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 FGFR1P11362 822 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 POU3F3P20264 500 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-213ENST00000554600 PDCP20941 246 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 RPA1P27694 616 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 RARRES1P49788 294 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 FXR2P51116 673 aaKnown RBP eCLIP11.86□□□□□ -0.51
SHMT2-213ENST00000554600 TFDP1Q14186 410 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 MXD4Q14582 209 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-213ENST00000554600 ZRSR1Q15695 479 aaKnown RBP11.86□□□□□ -0.51
SHMT2-213ENST00000554600 PTPROQ16827 1216 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 DTHD1Q6ZMT9 781 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 C4orf32Q8N8J7 132 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 SNX29Q8TEQ0 813 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 C11orf84Q9BUA3 381 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-213ENST00000554600 POLR3FQ9H1D9 316 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-213ENST00000554600 XPNPEP1Q9NQW7 623 aa11.86□□□□□ -0.51
SHMT2-213ENST00000554600 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.86□□□□□ -0.51
SHMT2-213ENST00000554600 INO80B-WBP1J3KQ70 363 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 LAD1O00515 517 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 HOXA2O43364 376 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 ERLIN2O94905 339 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 RB1P06400 928 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 XRCC6P12956 609 aaKnown RBP eCLIP11.85□□□□□ -0.51
SHMT2-213ENST00000554600 COL9A1P20849 921 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 CUL4AQ13619 759 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 LONRF3Q496Y0 759 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 KRT79Q5XKE5 535 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 SRGAP1Q7Z6B7 1085 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 ECHDC2Q86YB7 292 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 CRIPAKQ8N1N5 446 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 ASAP3Q8TDY4 903 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 MRPL38Q96DV4 380 aaKnown RBP11.85□□□□□ -0.51
SHMT2-213ENST00000554600 ELAC1Q9H777 363 aaKnown RBP11.85□□□□□ -0.51
SHMT2-213ENST00000554600 IFT122Q9HBG6 1241 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 ALG13Q9NP73 1137 aaKnown RBP11.85□□□□□ -0.51
SHMT2-213ENST00000554600 CHST12Q9NRB3 414 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 AAASQ9NRG9 546 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 LMCD1Q9NZU5 365 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 DBR1Q9UK59 544 aaKnown RBP11.85□□□□□ -0.51
SHMT2-213ENST00000554600 KIAA1024Q9UPX6 916 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 STK24Q9Y6E0 443 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 CITO14578 2027 aa11.85□□□□□ -0.51
SHMT2-213ENST00000554600 VWA3AA6NCI4 1184 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 LRRIQ4A6NIV6 560 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 PP2D1A8MPX8 630 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 K7ELQ4 463 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-213ENST00000554600 CDC25AP30304 524 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 PRPHP41219 470 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 FAM189BP81408 668 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 NCBP1Q09161 790 aaKnown RBP11.84□□□□□ -0.51
SHMT2-213ENST00000554600 PDIA5Q14554 519 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 TIGD5Q53EQ6 642 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 PADI6Q6TGC4 694 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 EP400NLQ6ZTU2 488 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 MCPH1Q8NEM0 835 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 HELQQ8TDG4 1101 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 CLP1Q92989 425 aaKnown RBP11.84□□□□□ -0.51
SHMT2-213ENST00000554600 PLVAPQ9BX97 442 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 TMEM117Q9H0C3 514 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 MINDY3Q9H8M7 445 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 GPRC5CQ9NQ84 441 aa11.84□□□□□ -0.51
SHMT2-213ENST00000554600 DDX19AQ9NUU7 478 aaKnown RBP11.84□□□□□ -0.51
SHMT2-213ENST00000554600 PCDHB12Q9Y5F1 795 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms