RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 ZNF70Q9UC06 446 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 TRAF3IP3Q9Y228 551 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 PLAAQ9Y263 795 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 TMX2Q9Y320 296 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 ASTN1O14525 1302 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 CETN3O15182 167 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 AKAP3O75969 853 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 ZNF76P36508 570 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 CASP4P49662 377 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 ARID5AQ03989 594 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 BIRC3Q13489 604 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 ZYXQ15942 572 aaKnown RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 OTOP1Q7RTM1 612 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 RNF10Q8N5U6 811 aaKnown RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 GMLQ99445 158 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 HSD17B14Q9BPX1 270 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 POLR3CQ9BUI4 534 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 TLR10Q9BXR5 811 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 HERC5Q9UII4 1024 aaKnown RBP13.3□□□□□ -0.28
SHMT2-207ENST00000553837 HDAC9Q9UKV0 1011 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 ZBTB21Q9ULJ3 1066 aa13.3□□□□□ -0.28
SHMT2-207ENST00000553837 RBBP6Q7Z6E9 1792 aaKnown RBP13.29□□□□□ -0.28
SHMT2-207ENST00000553837 A0A087X0T9 212 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 C5orf60A6NFR6 353 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 CHMP2AO43633 222 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 SLITRK3O94933 977 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 SERPING1P05155 500 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 FAM228BP0C875 321 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 ENOX2Q16206 610 aaKnown RBP13.29□□□□□ -0.28
SHMT2-207ENST00000553837 KLHDC7AQ5VTJ3 777 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 RINT1Q6NUQ1 792 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 RSBN1LQ6PCB5 846 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-207ENST00000553837 RUFY4Q6ZNE9 571 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 FAM133AQ8N9E0 248 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 EIF1ADQ8N9N8 165 aaKnown RBP13.29□□□□□ -0.28
SHMT2-207ENST00000553837 SYN2Q92777 582 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-207ENST00000553837 DYDC2Q96IM9 177 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 NOX5Q96PH1 765 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 PACSIN1Q9BY11 444 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 FBXO28Q9NVF7 368 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 WRAP73Q9P2S5 460 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-207ENST00000553837 AJAP1Q9UKB5 411 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-207ENST00000553837 PSME4Q14997 1843 aa13.29□□□□□ -0.28
SHMT2-207ENST00000553837 GRID2IPA4D2P6 1211 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 PSMD10O75832 226 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 ECM2O94769 699 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-207ENST00000553837 EYA4O95677 639 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 RAPGEF1Q13905 1077 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 SLC9C1Q4G0N8 1177 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 GKAP1Q5VSY0 366 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-207ENST00000553837 PPP4R3CPQ6ZMV5 832 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 MIGA2Q7L4E1 593 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 CASKIN2Q8WXE0 1202 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 TMEM39BQ9GZU3 492 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 CPSF2Q9P2I0 782 aaKnown RBP13.28□□□□□ -0.28
SHMT2-207ENST00000553837 RABGAP1Q9Y3P9 1069 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 ZMYM2Q9UBW7 1377 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 ESYT3A0FGR9 886 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 CLIC2O15247 247 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 TGFB1I1O43294 461 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 ATP6V1G2O95670 118 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 RPSAP08865 295 aaKnown RBP13.28□□□□□ -0.28
SHMT2-207ENST00000553837 SLC15A2Q16348 729 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 BMT2Q1RMZ1 405 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 ARHGAP27Q6ZUM4 889 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 DNAAF5Q86Y56 855 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 KSR1Q8IVT5 923 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 FAM151AQ8WW52 585 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 HVCN1Q96D96 273 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 RANBP17Q9H2T7 1088 aaKnown RBP13.28□□□□□ -0.28
SHMT2-207ENST00000553837 ARHGEF10LQ9HCE6 1279 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 ZNF277Q9NRM2 450 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-207ENST00000553837 AIPL1Q9NZN9 384 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 SLC12A6Q9UHW9 1150 aa13.28□□□□□ -0.28
SHMT2-207ENST00000553837 SCAF8Q9UPN6 1271 aaKnown RBP13.28□□□□□ -0.28
SHMT2-207ENST00000553837 PDXKO00764 312 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 COQ9O75208 318 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 NR3C1P04150 777 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 ARP10275 920 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 KLRC1P26715 233 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 NMT1P30419 496 aaKnown RBP13.27□□□□□ -0.28
SHMT2-207ENST00000553837 ELF3P78545 371 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-207ENST00000553837 ZC2HC1CQ53FD0 456 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-207ENST00000553837 ODF2Q5BJF6 829 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 CRELD2Q6UXH1 353 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-207ENST00000553837 C1orf186Q6ZWK4 172 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 IRF2BP2Q7Z5L9 587 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 FRMD5Q7Z6J6 570 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 TPH2Q8IWU9 490 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 RBM46Q8TBY0 533 aaKnown RBP13.27□□□□□ -0.28
SHMT2-207ENST00000553837 CCT6BQ92526 530 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 SLC5A5Q92911 643 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 MS4A14Q96JA4 679 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 NOD2Q9HC29 1040 aa13.27□□□□□ -0.28
SHMT2-207ENST00000553837 ARMCX3Q9UH62 379 aaPredicted RBP13.27□□□□□ -0.28
SHMT2-207ENST00000553837 PPP1R12BO60237 982 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-207ENST00000553837 SNUPNO95149 360 aaKnown RBP13.27□□□□□ -0.29
SHMT2-207ENST00000553837 GCNT3O95395 438 aa13.27□□□□□ -0.29
SHMT2-207ENST00000553837 VIL1P09327 827 aaKnown RBP13.27□□□□□ -0.29
SHMT2-207ENST00000553837 PAEPP09466 180 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms