RNA–Protein interactions for RNA: ENST00000553529.5

SHMT2-206, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-206ENST00000553529 LLPHQ9BRT6 129 aaKnown RBP20.38■□□□□ 0.85
SHMT2-206ENST00000553529 C11orf84Q9BUA3 381 aaPredicted RBP20.38■□□□□ 0.85
SHMT2-206ENST00000553529 NSUN3Q9H649 340 aaKnown RBP20.38■□□□□ 0.85
SHMT2-206ENST00000553529 ATP6V0A4Q9HBG4 840 aa20.38■□□□□ 0.85
SHMT2-206ENST00000553529 TMEM161AQ9NX61 479 aa20.38■□□□□ 0.85
SHMT2-206ENST00000553529 COL4A3BPQ9Y5P4 624 aa20.38■□□□□ 0.85
SHMT2-206ENST00000553529 BRWD1Q9NSI6 2320 aa20.37■□□□□ 0.85
SHMT2-206ENST00000553529 BAG4O95429 457 aaKnown RBP20.37■□□□□ 0.85
SHMT2-206ENST00000553529 SPATA31C1P0DKV0 1188 aa20.37■□□□□ 0.85
SHMT2-206ENST00000553529 LTBRP36941 435 aa20.37■□□□□ 0.85
SHMT2-206ENST00000553529 TECP42680 631 aa20.37■□□□□ 0.85
SHMT2-206ENST00000553529 TOB1P50616 345 aaPredicted RBP20.37■□□□□ 0.85
SHMT2-206ENST00000553529 PTPROQ16827 1216 aa20.37■□□□□ 0.85
SHMT2-206ENST00000553529 SPOUT1Q5T280 376 aaKnown RBP20.37■□□□□ 0.85
SHMT2-206ENST00000553529 MAEAQ7L5Y9 396 aa20.37■□□□□ 0.85
SHMT2-206ENST00000553529 ZNF598Q86UK7 904 aaKnown RBP20.37■□□□□ 0.85
SHMT2-206ENST00000553529 NAP1L4Q99733 375 aaKnown RBP20.37■□□□□ 0.85
SHMT2-206ENST00000553529 GCOM2Q9BZD3 368 aaPredicted RBP20.37■□□□□ 0.85
SHMT2-206ENST00000553529 POLD4Q9HCU8 107 aa20.37■□□□□ 0.85
SHMT2-206ENST00000553529 GPRC5CQ9NQ84 441 aa20.37■□□□□ 0.85
SHMT2-206ENST00000553529 PIN4Q9Y237 131 aaKnown RBP20.37■□□□□ 0.85
SHMT2-206ENST00000553529 B4GALT3O60512 393 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 RB1P06400 928 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 AFF1P51825 1210 aaKnown RBP20.36■□□□□ 0.85
SHMT2-206ENST00000553529 LAMTOR4Q0VGL1 99 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 ECM1Q16610 540 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 TIGD5Q53EQ6 642 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 RBM23Q86U06 439 aaKnown RBP20.36■□□□□ 0.85
SHMT2-206ENST00000553529 COLGALT1Q8NBJ5 622 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 SYMPKQ92797 1274 aaKnown RBP20.36■□□□□ 0.85
SHMT2-206ENST00000553529 ZSCAN31Q96LW9 406 aaPredicted RBP20.36■□□□□ 0.85
SHMT2-206ENST00000553529 ZSWIM4Q9H7M6 989 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 CLDND1Q9NY35 253 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 COG5Q9UP83 839 aa20.36■□□□□ 0.85
SHMT2-206ENST00000553529 TNFRSF10AO00220 468 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 TBX10O75333 385 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 ZSCAN20P17040 1043 aaPredicted RBP20.35■□□□□ 0.85
SHMT2-206ENST00000553529 ERVFC1P60507 584 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 RABEP1Q15276 862 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 TTC38Q5R3I4 469 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 POTEGQ6S5H5 508 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 C4orf32Q8N8J7 132 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 FAM184AQ8NB25 1140 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 SLC7A3Q8WY07 619 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 TMX3Q96JJ7 454 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 SH2B1Q9NRF2 756 aaPredicted RBP20.35■□□□□ 0.85
SHMT2-206ENST00000553529 PCDHB6Q9Y5E3 794 aa20.35■□□□□ 0.85
SHMT2-206ENST00000553529 CUL9Q8IWT3 2517 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 NT5C1B-RDH14C9J2C7 533 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 PER2O15055 1255 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 EIF5BO60841 1220 aaKnown RBP20.34■□□□□ 0.85
SHMT2-206ENST00000553529 DNM2P50570 870 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 SAFBQ15424 915 aaKnown RBP eCLIP20.34■□□□□ 0.85
SHMT2-206ENST00000553529 CATSPER4Q7RTX7 472 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 FERMT3Q86UX7 667 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 TMEM173Q86WV6 379 aaPredicted RBP20.34■□□□□ 0.85
SHMT2-206ENST00000553529 CATSPER3Q86XQ3 398 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 NOSTRINQ8IVI9 506 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 RNF149Q8NC42 400 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 IL27Q8NEV9 243 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 MTRQ99707 1265 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 PLVAPQ9BX97 442 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 FOXP1Q9H334 677 aaPredicted RBP20.34■□□□□ 0.85
SHMT2-206ENST00000553529 ELAC1Q9H777 363 aaKnown RBP20.34■□□□□ 0.85
SHMT2-206ENST00000553529 RWDD3Q9Y3V2 267 aa20.34■□□□□ 0.85
SHMT2-206ENST00000553529 A0A0U1RQF3 1178 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 PP2D1A8MPX8 630 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 USO1O60763 962 aaKnown RBP20.33■□□□□ 0.85
SHMT2-206ENST00000553529 FGF18O76093 207 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 OR52Z1P0C646 297 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 PHKA2P46019 1235 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 RARRES1P49788 294 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 IL17AQ16552 155 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 ODR4Q5SWX8 454 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 UBXN11Q5T124 520 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 TWF2Q6IBS0 349 aaKnown RBP20.33■□□□□ 0.85
SHMT2-206ENST00000553529 ZNF410Q86VK4 478 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 CDR2LQ86X02 465 aaPredicted RBP20.33■□□□□ 0.85
SHMT2-206ENST00000553529 NEK9Q8TD19 979 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 P2RX5Q93086 422 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 CPB2Q96IY4 423 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 TBC1D32Q96NH3 1257 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 TMEM117Q9H0C3 514 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 USP20Q9Y2K6 914 aa20.33■□□□□ 0.85
SHMT2-206ENST00000553529 HOXA11P31270 313 aaPredicted RBP20.32■□□□□ 0.84
SHMT2-206ENST00000553529 RFC5P40937 340 aa20.32■□□□□ 0.84
SHMT2-206ENST00000553529 HMGN5P82970 282 aaKnown RBP20.32■□□□□ 0.84
SHMT2-206ENST00000553529 CAPSQ13938 189 aa20.32■□□□□ 0.84
SHMT2-206ENST00000553529 COL19A1Q14993 1142 aa20.32■□□□□ 0.84
SHMT2-206ENST00000553529 LEXMQ3ZCV2 418 aa20.32■□□□□ 0.84
SHMT2-206ENST00000553529 THNSL1Q8IYQ7 743 aa20.32■□□□□ 0.84
SHMT2-206ENST00000553529 VN1R2Q8NFZ6 395 aa20.32■□□□□ 0.84
SHMT2-206ENST00000553529 BCL7CQ8WUZ0 217 aaPredicted RBP20.32■□□□□ 0.84
SHMT2-206ENST00000553529 PSPC1Q8WXF1 523 aaKnown RBP20.32■□□□□ 0.84
SHMT2-206ENST00000553529 AGPAT5Q9NUQ2 364 aa20.32■□□□□ 0.84
SHMT2-206ENST00000553529 INPP5FQ9Y2H2 1132 aa20.32■□□□□ 0.84
SHMT2-206ENST00000553529 B4GALT5O43286 388 aa20.31■□□□□ 0.84
SHMT2-206ENST00000553529 LYPLA2O95372 231 aa20.31■□□□□ 0.84
SHMT2-206ENST00000553529 GLP2RO95838 553 aa20.31■□□□□ 0.84
SHMT2-206ENST00000553529 SFPQP23246 707 aaKnown RBP eCLIP20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms