RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 ARHGEF19Q8IW93 802 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 DAW1Q8N136 415 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 BBXQ8WY36 941 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 OTUD5Q96G74 571 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 CEP63Q96MT8 703 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 FAM213AQ9BRX8 229 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 SELENOOQ9BVL4 669 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 INTS2Q9H0H0 1204 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 FAM204AQ9H8W3 233 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 LUC7LQ9NQ29 371 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 L1RE1Q9UN81 338 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 USTQ9Y2C2 406 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 ZNF536O15090 1300 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 GRID2IPA4D2P6 1211 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 ADM5C9JUS6 153 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 DDX3XO00571 662 aaKnown RBP eCLIP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 PDXKO00764 312 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 EIF3JO75822 258 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 GNA14O95837 355 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 ICAM1P05362 532 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 P4HBP07237 508 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 GLI1P08151 1106 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 SRGAP2CP0DJJ0 459 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 HNRNPH2P55795 449 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 SLC18A3Q16572 532 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 FAM160B2Q86V87 743 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 TRIM50Q86XT4 487 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 SPIRE2Q8WWL2 714 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 CTNNBL1Q8WYA6 563 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 ARHGEF26Q96DR7 871 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 RANBP17Q9H2T7 1088 aaKnown RBP6.08□□□□□ -1.44
LIMA1-215ENST00000552823 KMT5AQ9NQR1 393 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 AMACRQ9UHK6 382 aa6.08□□□□□ -1.44
LIMA1-215ENST00000552823 RNF40O75150 1001 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 GJB6O95452 261 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 RARRES1P49788 294 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 SNX1Q13596 522 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 TRIP13Q15645 432 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 CFAP221Q4G0U5 840 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 GJC2Q5T442 439 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 PHLDB3Q6NSJ2 640 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 IRF2BP2Q7Z5L9 587 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 CCDC25Q86WR0 208 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 CLEC4DQ8WXI8 215 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 SLC5A5Q92911 643 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 TATDN2Q93075 761 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 PDCD2LQ9BRP1 358 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 TSGA10Q9BZW7 698 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 GANQ9H2C0 597 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 ELP3Q9H9T3 547 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 HSPBP1Q9NZL4 362 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 NAGPAQ9UK23 515 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 PTPN22Q9Y2R2 807 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 ZNF541Q9H0D2 1346 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 WNK3Q9BYP7 1800 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 KRIT1O00522 736 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 SGPL1O95470 568 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 KRT14P02533 472 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 GJB1P08034 283 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 CIITAP33076 1130 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 PGM5Q15124 567 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 PAPD7Q5XG87 772 aaKnown RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 SCARA3Q6AZY7 606 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 BTNL9Q6UXG8 535 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 RPUSD2Q8IZ73 545 aaKnown RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 BSNDQ8WZ55 320 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 TRIM51Q9BSJ1 452 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 POLR3CQ9BUI4 534 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 CCDC113Q9H0I3 377 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 THAP2Q9H0W7 228 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 FAM184BQ9ULE4 1060 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 CLEC11AQ9Y240 323 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 NR2E1Q9Y466 385 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 MYO3BQ8WXR4 1341 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 IGSF9BQ9UPX0 1349 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 MYH4Q9Y623 1939 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 GOLGA6BA6NDN3 693 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 RAD51CO43502 376 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 FGGP02679 453 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 FTLP02792 175 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 ADRB2P07550 413 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 CD58P19256 250 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 KCNJ1P48048 391 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 MXI1P50539 228 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 VAMP7P51809 220 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 DHX9Q08211 1270 aaKnown RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 GRM1Q13255 1194 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 ORC1Q13415 861 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 ORC2Q13416 577 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 MTM1Q13496 603 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 TNFAIP1Q13829 316 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 TMEM63BQ5T3F8 832 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 SCARA5Q6ZMJ2 495 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 CCNI2Q6ZMN8 369 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 STXBP4Q6ZWJ1 553 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 FRMD5Q7Z6J6 570 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 LRRC71Q8N4P6 559 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 TSEN2Q8NCE0 465 aaKnown RBP6.07□□□□□ -1.44
LIMA1-215ENST00000552823 ZNF280CQ8ND82 737 aa6.07□□□□□ -1.44
LIMA1-215ENST00000552823 LNX1Q8TBB1 728 aaPredicted RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms