RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 KRT25Q7Z3Z0 450 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 JAMLQ86YT9 394 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 REXO1Q8N1G1 1221 aaKnown RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 ARMC2Q8NEN0 867 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 WDR66Q8TBY9 1149 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.25□□□□□ -1.572e-6■■■■■ 29
LIMA1-214ENST00000552783 TMEM237Q96Q45 408 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 HDAC9Q9UKV0 1011 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PTPN22Q9Y2R2 807 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PCDHA3Q9Y5H8 950 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 A0A1B0GVG6 124 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 BTNL10A8MVZ5 291 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 RSPH10B2B2RC85 870 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 MEIS1O00470 390 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 CES2O00748 559 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 IRF6O14896 467 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 CLIC2O15247 247 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PPP1R11O60927 126 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 NUDT17P0C025 328 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 RSPH10BP0C881 870 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 RASA1P20936 1047 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PTGIRP43119 386 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 GSTO1P78417 241 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 KRT79Q5XKE5 535 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 NUGGCQ68CJ6 796 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 VSTM1Q6UX27 236 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 FAM196AQ6ZSG2 479 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 ASRGL1Q7L266 308 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 ARMC9Q7Z3E5 817 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PRUNE1Q86TP1 453 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 TAX1BP1Q86VP1 789 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 CYP4X1Q8N118 509 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 ANKS4BQ8N8V4 417 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 ANKRD42Q8N9B4 389 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PHC3Q8NDX5 983 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 NEK9Q8TD19 979 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 KLHL29Q96CT2 875 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 PGM2Q96G03 612 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 TSG101Q99816 390 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 MXD3Q9BW11 206 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 THAP2Q9H0W7 228 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SLITRK6Q9H5Y7 841 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 CNOT10Q9H9A5 744 aaKnown RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 RIC8AQ9NPQ8 531 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SEPT11Q9NVA2 429 aaKnown RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SAMD15Q9P1V8 674 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SUCLA2Q9P2R7 463 aaPredicted RBP5.25□□□□□ -1.57
LIMA1-214ENST00000552783 SWAP70Q9UH65 585 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 KIAA1024Q9UPX6 916 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 DAAM1Q9Y4D1 1078 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 RREB1Q92766 1687 aa5.25□□□□□ -1.57
LIMA1-214ENST00000552783 FAM196BA6NMK8 535 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 SFI1A8K8P3 1242 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CCDC188H7C350 402 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CETPP11597 493 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ZNF76P36508 570 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 MSH2P43246 934 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 FXR2P51116 673 aaKnown RBP eCLIP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 SEMA3FQ13275 785 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 DOK7Q18PE1 504 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 TNFAIP8L3Q5GJ75 292 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 KIAA1755Q5JYT7 1200 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 DENND2CQ68D51 928 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 FAM43BQ6ZT52 329 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CCDC25Q86WR0 208 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 PRELID2Q8N945 189 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CCDC26Q8TAB7 109 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 SPOCK2Q92563 424 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CDCA7Q9BWT1 371 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 RAB34Q9BZG1 259 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ARHGEF3Q9NR81 526 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 EMILIN3Q9NT22 766 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 USP40Q9NVE5 1235 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 NOP53Q9NZM5 478 aaKnown RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 STK17AQ9UEE5 414 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 NUMBLQ9Y6R0 609 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 PFASO15067 1338 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ITGB4P16144 1822 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 TMEM120BA0PK00 339 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 POTEFA5A3E0 1075 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 A6NHS1 94 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 RIPK2O43353 540 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 ACSL3O95573 720 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 FGFR1OPO95684 399 aaKnown RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 GSTA1P08263 222 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 PDHA1P08559 390 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 H2AFZP0C0S5 128 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 POTEIP0CG38 1075 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 PCP11498 1178 aaKnown RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 KRT13P13646 458 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 CHRNB2P17787 502 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 PPP1R2P41236 205 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 JAM2P57087 298 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 COPS2P61201 443 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 IRX1P78414 480 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-214ENST00000552783 PPATQ06203 517 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 BLMHQ13867 455 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 EPHA7Q15375 998 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 EXOC3L4Q17RC7 722 aa5.24□□□□□ -1.57
LIMA1-214ENST00000552783 GNPTABQ3T906 1256 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms