RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 LARP4BQ92615 738 aaKnown RBP18■□□□□ 0.47
CHMP1A-209ENST00000550872 APBB2Q92870 758 aa18■□□□□ 0.47
CHMP1A-209ENST00000550872 STK17AQ9UEE5 414 aa18■□□□□ 0.47
CHMP1A-209ENST00000550872 PADI3Q9ULW8 664 aa18■□□□□ 0.47
CHMP1A-209ENST00000550872 A0A087X0B3 334 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 ABHD14A-ACY1A0A1B0GW23 586 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 GPR182O15218 404 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 GLRA2P23416 452 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 TPRNQ4KMQ1 711 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 RESP18Q5W5W9 173 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 ADALQ6DHV7 355 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 GPBP1Q86WP2 473 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 KIFAP3Q92845 792 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 INO80BQ9C086 356 aaPredicted RBP17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 SIP14410 1827 aa17.99■□□□□ 0.47
CHMP1A-209ENST00000550872 CSDE1O75534 798 aaKnown RBP17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 BAIAP3O94812 1187 aa17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 RAD51AP2Q09MP3 1159 aa17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 CAPSQ13938 189 aa17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 FAM228AQ86W67 206 aa17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 IFT122Q9HBG6 1241 aa17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 ERVK-5Q9HDB9 667 aa17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 KCND2Q9NZV8 630 aa17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 CXXC1Q9P0U4 656 aaPredicted RBP17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 ST3GAL5Q9UNP4 418 aa17.98■□□□□ 0.47
CHMP1A-209ENST00000550872 LRRIQ4A6NIV6 560 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 EFCAB14O75071 495 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 HIP1RO75146 1068 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 KRT18P05783 430 aaKnown RBP17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 FGFR4P22455 802 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 GUCY2CP25092 1073 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 PHKA2P46019 1235 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 KCNJ6P48051 423 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 PPP2R5AQ15172 486 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 NAALADL2Q58DX5 795 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 RASIP1Q5U651 963 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 SV2BQ7L1I2 683 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 SRGAP1Q7Z6B7 1085 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 DHX58Q96C10 678 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 IFT74Q96LB3 600 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 TIPINQ9BVW5 301 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 SLC4A7Q9Y6M7 1214 aa17.97■□□□□ 0.47
CHMP1A-209ENST00000550872 COL6A3P12111 3177 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 NPHP3-ACAD11A0A0J9YXS1 232 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 SFPQP23246 707 aaKnown RBP eCLIP17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 CMA1P23946 247 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 PTENP60484 403 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 POU5F1BQ06416 359 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 ARSHQ5FYA8 562 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 IQUBQ8NA54 791 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 BSNDQ8WZ55 320 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 DRC1Q96MC2 740 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 FTHL17Q9BXU8 183 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 KCNH3Q9ULD8 1083 aa17.96■□□□□ 0.47
CHMP1A-209ENST00000550872 A0A1B0GVL5 298 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 GOLGA6L4A6NEF3 574 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 SFI1A8K8P3 1242 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 SOX1O00570 391 aaPredicted RBP17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 POLR2DO15514 142 aaKnown RBP17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 NAMPTP43490 491 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 WDR5P61964 334 aaKnown RBP17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 CACNB1Q02641 598 aaPredicted RBP17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 MAPK7Q13164 816 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 E2F4Q16254 413 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 LRIT3Q3SXY7 679 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 CATSPER4Q7RTX7 472 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 DAW1Q8N136 415 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 DEPTORQ8TB45 409 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 TMX1Q9H3N1 280 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 MINDY3Q9H8M7 445 aa17.95■□□□□ 0.46
CHMP1A-209ENST00000550872 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 A0A1W2PQ27 194 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 A0A1W2PQ64 194 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 A0A1W2PQD8 194 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 INO80B-WBP1J3KQ70 363 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 ENPP3O14638 875 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 AMHP03971 560 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 PFKFB1P16118 471 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 PEX3P56589 373 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 GIT2Q14161 759 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 FAM43BQ6ZT52 329 aaPredicted RBP17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 RTN4RL1Q86UN2 441 aaPredicted RBP17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 IFNLR1Q8IU57 520 aaPredicted RBP17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 ZBTB8OSQ8IWT0 167 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 REEP2Q9BRK0 252 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 PYM1Q9BRP8 204 aaKnown RBP17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 CUEDC2Q9H467 287 aa17.94■□□□□ 0.46
CHMP1A-209ENST00000550872 A0A0C4DFX4 3053 aa17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 DENND3A2RUS2 1198 aa17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 MYMKA6NI61 221 aa17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 CCDC169A6NNP5 214 aa17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 FAM13AO94988 1023 aa17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 ATP2A2P16615 1042 aaKnown RBP17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 ZSCAN20P17040 1043 aaPredicted RBP17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 DEFB103AP81534 67 aa17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 DMP1Q13316 513 aaPredicted RBP17.93■□□□□ 0.46
CHMP1A-209ENST00000550872 CSPP1Q1MSJ5 1256 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms