RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 GLDCP23378 1020 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 AKAP5P24588 427 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 ADKP55263 362 aaKnown RBP6.41□□□□□ -1.38
LIMA1-205ENST00000550592 MAP3K12Q12852 859 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 DGKDQ16760 1214 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 MBNL2Q5VZF2 373 aaKnown RBP6.41□□□□□ -1.38
LIMA1-205ENST00000550592 GRAMD4Q6IC98 578 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 BCL6BQ8N143 479 aaPredicted RBP6.41□□□□□ -1.38
LIMA1-205ENST00000550592 OR5AN1Q8NGI8 311 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 CCDC136Q96JN2 1154 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 HIST1H2AHQ96KK5 128 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 HIST1H2AJQ99878 128 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 NOL10Q9BSC4 688 aaKnown RBP6.41□□□□□ -1.38
LIMA1-205ENST00000550592 GOLGA6AQ9NYA3 693 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 FBXO10Q9UK96 956 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 CROTQ9UKG9 612 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 SYNPO2Q9UMS6 1093 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 KIF21AQ7Z4S6 1674 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 LMTK3Q96Q04 1460 aa6.41□□□□□ -1.38
LIMA1-205ENST00000550592 PLA2G1BP04054 148 aaKnown RBP6.4□□□□□ -1.38
LIMA1-205ENST00000550592 ATF3P18847 181 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 MLLT6P55198 1093 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-205ENST00000550592 ANTXR2P58335 489 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 CDK17Q00537 523 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 PPARAQ07869 468 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 MESP2Q0VG99 397 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 SMAD4Q13485 552 aaKnown RBP6.4□□□□□ -1.38
LIMA1-205ENST00000550592 TCIRG1Q13488 830 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 WDR72Q3MJ13 1102 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 RRP12Q5JTH9 1297 aaKnown RBP6.4□□□□□ -1.38
LIMA1-205ENST00000550592 TMEM200BQ69YZ2 307 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 GAREM2Q75VX8 874 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 PPP1R14CQ8TAE6 165 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 FNIP1Q8TF40 1166 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 FATE1Q969F0 183 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 AIFM3Q96NN9 605 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 SPATA6Q9NWH7 488 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-205ENST00000550592 EVLQ9UI08 416 aaPredicted RBP6.4□□□□□ -1.38
LIMA1-205ENST00000550592 TUBD1Q9UJT1 453 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 IRAK3Q9Y616 596 aa6.4□□□□□ -1.38
LIMA1-205ENST00000550592 A0A0A6YYK5 440 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 A0A0G2JNJ9 132 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 H0Y858 1186 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 NRP2O60462 931 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 SEC24DO94855 1032 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 MED14OSP0DP75 135 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 LPOP22079 712 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 IL13P35225 146 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 TBX4P57082 545 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 CAP1Q01518 475 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 EIF4HQ15056 248 aaKnown RBP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 EPM2AIP1Q7L775 607 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 FAM129CQ86XR2 697 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 SOX7Q9BT81 388 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 ACE2Q9BYF1 805 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 OSBPL6Q9BZF3 934 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 CSRNP2Q9H175 543 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 EPB41L4AQ9HCS5 686 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 SAE1Q9UBE0 346 aaPredicted RBP6.39□□□□□ -1.39
LIMA1-205ENST00000550592 Q9UFV3 132 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 ZBTB21Q9ULJ3 1066 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 PMF1-BGLAPU3KQ54 211 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 ATAD2BQ9ULI0 1458 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 DCAF1Q9Y4B6 1507 aa6.39□□□□□ -1.39
LIMA1-205ENST00000550592 PRC1O43663 620 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 KLHL18O94889 574 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 XPAP23025 273 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-205ENST00000550592 RPL13P26373 211 aaKnown RBP6.38□□□□□ -1.39
LIMA1-205ENST00000550592 MALLQ13021 153 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 ADRM1Q16186 407 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 GFOD2Q3B7J2 385 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 MINDY4Q4G0A6 757 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 THEMISQ8N1K5 641 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-205ENST00000550592 MIER2Q8N344 545 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 ZCCHC14Q8WYQ9 949 aaKnown RBP6.38□□□□□ -1.39
LIMA1-205ENST00000550592 COA7Q96BR5 231 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 DYDC2Q96IM9 177 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 FDXACB1Q9BRP7 624 aaPredicted RBP6.38□□□□□ -1.39
LIMA1-205ENST00000550592 PCGF6Q9BYE7 350 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 SCOCQ9UIL1 159 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 ARAP1Q96P48 1450 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 WDR62O43379 1518 aa6.38□□□□□ -1.39
LIMA1-205ENST00000550592 POU2F2P09086 479 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 ZNF28P17035 718 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 POLD1P28340 1107 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 ADCY8P40145 1251 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 WASP42768 502 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 NRG3P56975 720 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 DLX2Q07687 328 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-205ENST00000550592 HLTFQ14527 1009 aaKnown RBP eCLIP6.37□□□□□ -1.39
LIMA1-205ENST00000550592 CNKSR3Q6P9H4 555 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 TRMT10BQ6PF06 316 aaKnown RBP6.37□□□□□ -1.39
LIMA1-205ENST00000550592 BTNL9Q6UXG8 535 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 SYDE1Q6ZW31 735 aaPredicted RBP6.37□□□□□ -1.39
LIMA1-205ENST00000550592 OTOP2Q7RTS6 562 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 SAPCD2Q86UD0 394 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 PPM1NQ8N819 430 aa6.37□□□□□ -1.39
LIMA1-205ENST00000550592 CLIP3Q96DZ5 547 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms