RNA–Protein interactions for RNA: ENST00000550283.1

RAB5B-208, Transcript of RAB5B, member RAS oncogene family, human

TSL 3

Gene RAB5B, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5B-208	ENST00000550283	ADGRA3	Q8IWK6	1321 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	NPHP3-ACAD11	A0A0J9YXS1	232 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	LINC01553	A4QN01	128 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	MEIS3P2	A8K0S8	358 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283		C9IYK1	514 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	TLL1	O43897	1013 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	DKC1	O60832	514 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	ATF7	P17544	494 aa	Predicted RBP	12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	TMOD1	P28289	359 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	MAPK7	Q13164	816 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	KARS	Q15046	597 aa	Known RBP	12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	AMHR2	Q16671	573 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	HYI	Q5T013	277 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	ARL6IP4	Q66PJ3	421 aa	Known RBP	12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	PADI6	Q6TGC4	694 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	SLC7A3	Q8WY07	619 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	MYLIP	Q8WY64	445 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	APBB2	Q92870	758 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	NACC1	Q96RE7	527 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	CDX2	Q99626	313 aa	Predicted RBP	12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	MTR	Q99707	1265 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	KIFC3	Q9BVG8	833 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	MTIF3	Q9H2K0	278 aa	Known RBP	12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	PRDM12	Q9H4Q4	367 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	ZNF576	Q9H609	170 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	ATP6V0A4	Q9HBG4	840 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	BLOC1S4	Q9NUP1	217 aa		12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	DAXX	Q9UER7	740 aa	Predicted RBP	12.48	□□□□□ -0.41
RAB5B-208	ENST00000550283	B4GALT5	O43286	388 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	DGAT1	O75907	488 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	AMH	P03971	560 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	HSP90AA1	P07900	732 aa	Known RBP	12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	XRCC6	P12956	609 aa	Known RBP eCLIP	12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	CYP11B2	P19099	503 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	HOXA11	P31270	313 aa	Predicted RBP	12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	DDIT3	P35638	169 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	NASP	P49321	788 aa	Predicted RBP	12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	RAD51AP2	Q09MP3	1159 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	SLC39A14	Q15043	492 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	ARSH	Q5FYA8	562 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	FAM102B	Q5T8I3	360 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	ZNF697	Q5TEC3	545 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	GPR153	Q6NV75	609 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	CABP7	Q86V35	215 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	USP38	Q8NB14	1042 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	RNF149	Q8NC42	400 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	LINC00301	Q8NCQ3	95 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	ERMN	Q8TAM6	284 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	SP7	Q8TDD2	431 aa	Predicted RBP	12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	PSPC1	Q8WXF1	523 aa	Known RBP	12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	SCLT1	Q96NL6	688 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	C17orf80	Q9BSJ5	609 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	RGS18	Q9NS28	235 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	TTC3	P53804	2025 aa		12.47	□□□□□ -0.41
RAB5B-208	ENST00000550283	PRUNE2	Q8WUY3	3088 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	ARHGEF35	A5YM69	484 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	SFI1	A8K8P3	1242 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	EYA4	O95677	639 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	BRD1	O95696	1058 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	RPLP2	P05387	115 aa	Known RBP	12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	FGFR1	P11362	822 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	PLCG1	P19174	1290 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	SLC12A3	P55017	1021 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	FAM189B	P81408	668 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	DNM1	Q05193	864 aa	Known RBP	12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	RAB30	Q15771	203 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	LONRF3	Q496Y0	759 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	UBXN11	Q5T124	520 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	KRT79	Q5XKE5	535 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	PPP2R2D	Q66LE6	453 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	HAUS3	Q68CZ6	603 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	RINT1	Q6NUQ1	792 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	C1orf186	Q6ZWK4	172 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	ZNF410	Q86VK4	478 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	CDR2L	Q86X02	465 aa	Predicted RBP	12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	SYMPK	Q92797	1274 aa	Known RBP	12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	ZNF689	Q96CS4	500 aa	Predicted RBP	12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	RAD9A	Q99638	391 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	ZBED2	Q9BTP6	218 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	GCOM2	Q9BZD3	368 aa	Predicted RBP	12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	PRDM6	Q9NQX0	595 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	MSRA	Q9UJ68	235 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	MTUS1	Q9ULD2	1270 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	PPME1	Q9Y570	386 aa		12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	SRPRB	Q9Y5M8	271 aa	Known RBP	12.46	□□□□□ -0.41
RAB5B-208	ENST00000550283	COL4A4	P53420	1690 aa	Predicted RBP	12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	GPR182	O15218	404 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	LPXN	O60711	386 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	EFCAB14	O75071	495 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	DGKI	O75912	1065 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	DNM2	P50570	870 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	AFF1	P51825	1210 aa	Known RBP	12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	PTEN	P60484	403 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	MBTD1	Q05BQ5	628 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	MCM6	Q14566	821 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	PAN2	Q504Q3	1202 aa	Known RBP	12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	NAALADL2	Q58DX5	795 aa		12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	AXDND1	Q5T1B0	1012 aa	Predicted RBP	12.45	□□□□□ -0.42
RAB5B-208	ENST00000550283	LPP	Q93052	612 aa		12.45	□□□□□ -0.42

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms