RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ZKSCAN8Q15776 578 aaPredicted RBP16.16■□□□□ 0.18
CUX1-214ENST00000550008 RINT1Q6NUQ1 792 aa16.16■□□□□ 0.18
CUX1-214ENST00000550008 AKT1S1Q96B36 256 aa16.16■□□□□ 0.18
CUX1-214ENST00000550008 SLC10A4Q96EP9 437 aa16.16■□□□□ 0.18
CUX1-214ENST00000550008 ADAM22Q9P0K1 906 aa16.16■□□□□ 0.18
CUX1-214ENST00000550008 SGK1O00141 431 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 GALCP54803 685 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 CXCL9Q07325 125 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 CCDC6Q16204 474 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 C10orf76Q5T2E6 689 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 TAOK1Q7L7X3 1001 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 APBB1IPQ7Z5R6 666 aaPredicted RBP16.15■□□□□ 0.18
CUX1-214ENST00000550008 RHPN2Q8IUC4 686 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 TUFT1Q9NNX1 390 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 PARP2Q9UGN5 583 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 POLR2BP30876 1174 aaKnown RBP16.15■□□□□ 0.18
CUX1-214ENST00000550008 FMO5P49326 533 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 FUT2Q10981 343 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 PPP2R5EQ16537 467 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 HHATQ5VTY9 493 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 ZNF302Q9NR11 478 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 CAPN6Q9Y6Q1 641 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 SOX5P35711 763 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 COG2Q14746 738 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 HADHQ16836 314 aaKnown RBP16.15■□□□□ 0.18
CUX1-214ENST00000550008 ZNF384Q8TF68 577 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 MAIP1Q8WWC4 291 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 ANKRD36BP1Q96IX9 119 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 ELP3Q9H9T3 547 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 HSPBP1Q9NZL4 362 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 ECEL1O95672 775 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 KRT1P04264 644 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 TFDP1Q14186 410 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 CDO1Q16878 200 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 CDR2LQ86X02 465 aaPredicted RBP16.15■□□□□ 0.18
CUX1-214ENST00000550008 RNF10Q8N5U6 811 aaKnown RBP16.15■□□□□ 0.18
CUX1-214ENST00000550008 SLC17A8Q8NDX2 589 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 ERGIC2Q96RQ1 377 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 JPH1Q9HDC5 661 aaPredicted RBP16.15■□□□□ 0.18
CUX1-214ENST00000550008 KIF1AQ12756 1690 aa16.15■□□□□ 0.18
CUX1-214ENST00000550008 TBX3O15119 743 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 WDR46O15213 610 aaKnown RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 ATMINO43313 823 aaPredicted RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 ATP5DP30049 168 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 YWHAEP62258 255 aaKnown RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 E2F4Q16254 413 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 KRT39Q6A163 491 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 RNF25Q96BH1 459 aaPredicted RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 ELMO3Q96BJ8 720 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 TSNARE1Q96NA8 513 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 MXRA8Q9BRK3 442 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 FAM86B1E9PN63 330 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 H7C0C1 242 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 FAM86B2P0C5J1 330 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 CAP2P40123 477 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 ARL1P40616 181 aaPredicted RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 ATP5OP48047 213 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 GPC5P78333 572 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 ALCAMQ13740 583 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 CENPPQ6IPU0 288 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 PALM2Q8IXS6 379 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 PI4K2AQ9BTU6 479 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 SLC9A2Q9UBY0 812 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 PLAGL2Q9UPG8 496 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 TMEM150BA6NC51 233 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 HNRNPH2P55795 449 aaKnown RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 SYT2Q8N9I0 419 aaPredicted RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 ZNF280CQ8ND82 737 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 SCFD1Q8WVM8 642 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 DUSP9Q99956 384 aaKnown RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 UNC45AQ9H3U1 944 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 FAM114A2Q9NRY5 505 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 RBM12Q9NTZ6 932 aaKnown RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 BLOC1S4Q9NUP1 217 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 MKRN1Q9UHC7 482 aaKnown RBP16.14■□□□□ 0.17
CUX1-214ENST00000550008 PLAAQ9Y263 795 aa16.14■□□□□ 0.17
CUX1-214ENST00000550008 MAPK6Q16659 721 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 HP1BP3Q5SSJ5 553 aaPredicted RBP16.13■□□□□ 0.17
CUX1-214ENST00000550008 DACT2Q5SW24 774 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 AMIGO3Q86WK7 504 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 CCDC13Q8IYE1 715 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 TEX13BQ9BXU2 312 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 ZWILCHQ9H900 591 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 L2HGDHQ9H9P8 463 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 MORC2Q9Y6X9 1032 aaPredicted RBP16.13■□□□□ 0.17
CUX1-214ENST00000550008 SETDB1Q15047 1291 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 VSIG1Q86XK7 387 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 RHOT2Q8IXI1 618 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 NEK9Q8TD19 979 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 MED10Q9BTT4 135 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 NUP85Q9BW27 656 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 PACSIN1Q9BY11 444 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 PLCB1Q9NQ66 1216 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 HACL1Q9UJ83 578 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 NOC2LQ9Y3T9 749 aaKnown RBP16.13■□□□□ 0.17
CUX1-214ENST00000550008 NALCNQ8IZF0 1738 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 HOXA10P31260 410 aaPredicted RBP16.13■□□□□ 0.17
CUX1-214ENST00000550008 SFNP31947 248 aa16.13■□□□□ 0.17
CUX1-214ENST00000550008 OSBPP22059 807 aa16.12■□□□□ 0.17
CUX1-214ENST00000550008 RWDD2BP57060 319 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms