RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 CELF4Q9BZC1 486 aaKnown RBP23.45■■□□□ 1.34
VPS29-206ENST00000549578 PRKAG2Q9UGJ0 569 aa23.45■■□□□ 1.34
VPS29-206ENST00000549578 A0A087WZ62 844 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 ASAP2O43150 1006 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 GTPBP6O43824 516 aaPredicted RBP23.44■■□□□ 1.34
VPS29-206ENST00000549578 RAG1P15918 1043 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 SYN1P17600 705 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 PEX3P56589 373 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 FAM26DQ5JW98 314 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 KANK3Q6NY19 840 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 CNNM4Q6P4Q7 775 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 SCLYQ96I15 445 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 FDXACB1Q9BRP7 624 aaPredicted RBP23.44■■□□□ 1.34
VPS29-206ENST00000549578 ZMYND8Q9ULU4 1186 aaPredicted RBP23.44■■□□□ 1.34
VPS29-206ENST00000549578 TANC1Q9C0D5 1861 aa23.44■■□□□ 1.34
VPS29-206ENST00000549578 LRRIQ4A6NIV6 560 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 TIMP1P01033 207 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 IQCF3P0C7M6 154 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 PLS3P13797 630 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 RGS19P49795 217 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 ZNF131P52739 623 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 POSTNQ15063 836 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 CCDC34Q96HJ3 373 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 IFT74Q96LB3 600 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 KIFC3Q9BVG8 833 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 OSBPL7Q9BZF2 842 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 PARVGQ9HBI0 331 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 MDM2Q00987 491 aaPredicted RBP23.43■■□□□ 1.34
VPS29-206ENST00000549578 PNOCQ13519 176 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 TFDP1Q14186 410 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 MBTPS1Q14703 1052 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 ODR4Q5SWX8 454 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 ZNF410Q86VK4 478 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 MYCT1Q8N699 235 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 TMEM40Q8WWA1 233 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 ERCC4Q92889 916 aaPredicted RBP23.43■■□□□ 1.34
VPS29-206ENST00000549578 IFT122Q9HBG6 1241 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 PANK4Q9NVE7 773 aa23.43■■□□□ 1.34
VPS29-206ENST00000549578 ADGRA3Q8IWK6 1321 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 FRMD3A2A2Y4 597 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 CCDC169A6NNP5 214 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 CSDE1O75534 798 aaKnown RBP23.42■■□□□ 1.34
VPS29-206ENST00000549578 NAMPTP43490 491 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 NPTX2P47972 431 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 CRYBB1P53674 252 aaPredicted RBP23.42■■□□□ 1.34
VPS29-206ENST00000549578 CDC42EP1Q00587 391 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 DPYDQ12882 1025 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 DMP1Q13316 513 aaPredicted RBP23.42■■□□□ 1.34
VPS29-206ENST00000549578 PPP2R5AQ15172 486 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 SFR1Q86XK3 245 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 C17orf75Q9HAS0 396 aa23.42■■□□□ 1.34
VPS29-206ENST00000549578 LARSQ9P2J5 1176 aaKnown RBP23.42■■□□□ 1.34
VPS29-206ENST00000549578 MBD3O95983 291 aa23.41■■□□□ 1.34
VPS29-206ENST00000549578 MYL1P05976 194 aa23.41■■□□□ 1.34
VPS29-206ENST00000549578 CAMK4Q16566 473 aa23.41■■□□□ 1.34
VPS29-206ENST00000549578 CCDC65Q8IXS2 484 aa23.41■■□□□ 1.34
VPS29-206ENST00000549578 ZNF710Q8N1W2 664 aa23.41■■□□□ 1.34
VPS29-206ENST00000549578 DEPTORQ8TB45 409 aa23.41■■□□□ 1.34
VPS29-206ENST00000549578 SCN5AQ14524 2016 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 KLRC4O43908 158 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 GHRP10912 638 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 DARSP14868 501 aaKnown RBP23.4■■□□□ 1.34
VPS29-206ENST00000549578 PHKA2P46019 1235 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 COASYQ13057 564 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 GPNMBQ14956 572 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 HERC4Q5GLZ8 1057 aaPredicted RBP23.4■■□□□ 1.34
VPS29-206ENST00000549578 FBXO47Q5MNV8 452 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 UNC13DQ70J99 1090 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 GCOM2Q9BZD3 368 aaPredicted RBP23.4■■□□□ 1.34
VPS29-206ENST00000549578 MINDY3Q9H8M7 445 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 KMT5AQ9NQR1 393 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 TBC1D7Q9P0N9 293 aa23.4■■□□□ 1.34
VPS29-206ENST00000549578 HOOK1Q9UJC3 728 aaKnown RBP23.4■■□□□ 1.34
VPS29-206ENST00000549578 LTBP2Q14767 1821 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 SLC16A4O15374 487 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 TRAK2O60296 914 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 NBNO60934 754 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 GAP43P17677 238 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 EIF4BP23588 611 aaKnown RBP23.39■■□□□ 1.34
VPS29-206ENST00000549578 PTENP60484 403 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 LPIN1Q14693 890 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 CDCA2Q69YH5 1023 aaPredicted RBP23.39■■□□□ 1.34
VPS29-206ENST00000549578 MFSD5Q6N075 450 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 ELOA2Q8IYF1 753 aaPredicted RBP23.39■■□□□ 1.34
VPS29-206ENST00000549578 SPIRE2Q8WWL2 714 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 HPS3Q969F9 1004 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 NOC2LQ9Y3T9 749 aaKnown RBP23.39■■□□□ 1.34
VPS29-206ENST00000549578 NR2E3Q9Y5X4 410 aa23.39■■□□□ 1.34
VPS29-206ENST00000549578 PVALEFA0A1B0GWK0 134 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 RPN1P04843 607 aaKnown RBP23.38■■□□□ 1.33
VPS29-206ENST00000549578 FGFR4P22455 802 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 POU5F1BQ06416 359 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 FAM178BQ8IXR5 827 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 BADQ92934 168 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 FIZ1Q96SL8 496 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 CLSTN2Q9H4D0 955 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 AGO3Q9H9G7 860 aaKnown RBP23.38■■□□□ 1.33
VPS29-206ENST00000549578 TNRC18O15417 2968 aaPredicted RBP23.38■■□□□ 1.33
VPS29-206ENST00000549578 CSF2RAP15509 400 aa23.38■■□□□ 1.33
VPS29-206ENST00000549578 NMT1P30419 496 aaKnown RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms