RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 DDX11L8A8MPP1 907 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 XBP1P17861 261 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 PBX3P40426 434 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 RBM10P98175 930 aaKnown RBP19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 PLCB3Q01970 1234 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 DUSP6Q16828 381 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 EARS2Q5JPH6 523 aaKnown RBP19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 KCNT2Q6UVM3 1135 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 PIK3AP1Q6ZUJ8 805 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 ZNF410Q86VK4 478 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 MRPS27Q92552 414 aaKnown RBP19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 HAS1Q92839 578 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 FDXACB1Q9BRP7 624 aaPredicted RBP19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 TLE6Q9H808 572 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 DACT1Q9NYF0 836 aa19.52■□□□□ 0.72
CHMP1A-205ENST00000548650 PRR33A8MZF0 331 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 CCNT1O60563 726 aaKnown RBP19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 LARGE1O95461 756 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 SFPQP23246 707 aaKnown RBP eCLIP19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 PPM1AP35813 382 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 QARSP47897 775 aaKnown RBP19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 DNM2P50570 870 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 CDC42EP1Q00587 391 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 PDE12Q6L8Q7 609 aaKnown RBP19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 POTEDQ86YR6 584 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 RHPN2Q8IUC4 686 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 HELQQ8TDG4 1101 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 MICAL1Q8TDZ2 1067 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 ZNF558Q96NG5 402 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 CDCA3Q99618 268 aaPredicted RBP19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 TRAIPQ9BWF2 469 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 CYP26B1Q9NR63 512 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 CHST12Q9NRB3 414 aa19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 SUCLA2Q9P2R7 463 aaPredicted RBP19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 ORC3Q9UBD5 711 aaPredicted RBP19.51■□□□□ 0.71
CHMP1A-205ENST00000548650 FSD2A1L4K1 749 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 PER2O15055 1255 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 TBX3O15119 743 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 EOMESO95936 686 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 FDPSP14324 419 aaKnown RBP19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 NPEPPSP55786 919 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 SPIRE1Q08AE8 756 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 ANKRD1Q15327 319 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 PLPP4Q5VZY2 271 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 KSR1Q8IVT5 923 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 TNFRSF25Q93038 417 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 GTF3C6Q969F1 213 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 NLRP4Q96MN2 994 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 TCF25Q9BQ70 676 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 LXNQ9BS40 222 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 PPP4R2Q9NY27 417 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 USP15Q9Y4E8 981 aaPredicted RBP19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 ARIH1Q9Y4X5 557 aaPredicted RBP19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 ZNF318Q5VUA4 2279 aa19.5■□□□□ 0.71
CHMP1A-205ENST00000548650 TECTAO75443 2155 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 PHKA2P46019 1235 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 NR5A1Q13285 461 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 KCNC3Q14003 757 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 ME3Q16798 604 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 SLC39A11Q8N1S5 342 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 NECAB1Q8N987 351 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 ZNF579Q8NAF0 562 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 WASF1Q92558 559 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 NAP1L4Q99733 375 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 JPH2Q9BR39 696 aaPredicted RBP19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 MRPL9Q9BYD2 267 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 ENTPD7Q9NQZ7 604 aa19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 PIN4Q9Y237 131 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-205ENST00000548650 HIDE1A8MVS5 230 aa19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 P4HBP07237 508 aaKnown RBP19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 SLC7A3Q8WY07 619 aa19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 FAM122AQ96E09 287 aa19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 DHX33Q9H6R0 707 aaKnown RBP19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 IFT122Q9HBG6 1241 aa19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 SPG21Q9NZD8 308 aa19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 MUTYHQ9UIF7 546 aa19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 PPME1Q9Y570 386 aa19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 COL4A3BPQ9Y5P4 624 aa19.48■□□□□ 0.71
CHMP1A-205ENST00000548650 DKC1O60832 514 aaKnown RBP eCLIP19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 KRT2P35908 639 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 EPHA7Q15375 998 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 HERC4Q5GLZ8 1057 aaPredicted RBP19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 TWF2Q6IBS0 349 aaKnown RBP19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 NCAPH2Q6IBW4 605 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 RNF135Q8IUD6 432 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 C4orf19Q8IY42 314 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 NSUN7Q8NE18 718 aaKnown RBP19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 RSPH1Q8WYR4 309 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 SUSD6Q92537 303 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 LPPQ93052 612 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 CEP170P1Q96L14 293 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 INO80BQ9C086 356 aaPredicted RBP19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 NGRNQ9NPE2 291 aaKnown RBP19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 AGPAT5Q9NUQ2 364 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 RGL1Q9NZL6 768 aa19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 PUF60Q9UHX1 559 aaKnown RBP19.47■□□□□ 0.71
CHMP1A-205ENST00000548650 MEIS3P2A8K0S8 358 aa19.46■□□□□ 0.71
CHMP1A-205ENST00000548650 YWHABP31946 246 aaKnown RBP19.46■□□□□ 0.71
CHMP1A-205ENST00000548650 RFC5P40937 340 aa19.46■□□□□ 0.71
CHMP1A-205ENST00000548650 RAB27AP51159 221 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 897 ms