RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ADGRA3Q8IWK6 1321 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 EVI5O60447 810 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 PGK2P07205 417 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 ADRB2P07550 413 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 PLS3P13797 630 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 KCNA2P16389 499 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 MYL7Q01449 175 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 DRAP1Q14919 205 aaPredicted RBP12.09□□□□□ -0.47
CUX1-212ENST00000547394 PHLDB3Q6NSJ2 640 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 NCAPG2Q86XI2 1143 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 GPC2Q8N158 579 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 NSUN6Q8TEA1 469 aaKnown RBP12.09□□□□□ -0.47
CUX1-212ENST00000547394 TLR10Q9BXR5 811 aa12.09□□□□□ -0.47
CUX1-212ENST00000547394 INTS2Q9H0H0 1204 aaKnown RBP12.09□□□□□ -0.47
CUX1-212ENST00000547394 LCA5LO95447 670 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 MYBL2P10244 700 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 NPTX2P47972 431 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 BFSP1Q12934 665 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 MKRN3Q13064 507 aaKnown RBP12.08□□□□□ -0.47
CUX1-212ENST00000547394 MAPK8IP2Q13387 824 aaPredicted RBP12.08□□□□□ -0.47
CUX1-212ENST00000547394 ZNF746Q6NUN9 644 aaPredicted RBP12.08□□□□□ -0.47
CUX1-212ENST00000547394 FOXR2Q6PJQ5 311 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 CREG2Q8IUH2 290 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 ARHGEF19Q8IW93 802 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 KRT222Q8N1A0 295 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 EHBP1Q8NDI1 1231 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 TRIM58Q8NG06 486 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 TMEM143Q96AN5 459 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 OSBPL9Q96SU4 736 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 MOV10L1Q9BXT6 1211 aaKnown RBP12.08□□□□□ -0.47
CUX1-212ENST00000547394 ACAD9Q9H845 621 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 METTL14Q9HCE5 456 aaKnown RBP12.08□□□□□ -0.47
CUX1-212ENST00000547394 TAS2R14Q9NYV8 317 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 HSPBP1Q9NZL4 362 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 AIPL1Q9NZN9 384 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 SNX12Q9UMY4 172 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 PCDHA10Q9Y5I2 948 aa12.08□□□□□ -0.47
CUX1-212ENST00000547394 PFASO15067 1338 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 LTBP3Q9NS15 1303 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 SSU72P8A0A1W2PR75 194 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 DENND3A2RUS2 1198 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 SLC16A3O15427 465 aaKnown RBP12.08□□□□□ -0.48
CUX1-212ENST00000547394 PPP1R12BO60237 982 aaPredicted RBP12.08□□□□□ -0.48
CUX1-212ENST00000547394 ADSSP30520 456 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 ACTR2P61160 394 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 MAP2K1Q02750 393 aaPredicted RBP12.08□□□□□ -0.48
CUX1-212ENST00000547394 TMEM63BQ5T3F8 832 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 ZBTB10Q96DT7 871 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 NOX5Q96PH1 765 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 TSGA10Q9BZW7 698 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 JPH1Q9HDC5 661 aaPredicted RBP12.08□□□□□ -0.48
CUX1-212ENST00000547394 DDX3XO00571 662 aaKnown RBP eCLIP12.08□□□□□ -0.481e-8■■□□□ 13.3
CUX1-212ENST00000547394 PRKCEQ02156 737 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 ALKBH5Q6P6C2 394 aaKnown RBP12.08□□□□□ -0.48
CUX1-212ENST00000547394 SLC20A1Q8WUM9 679 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 STRA6Q9BX79 667 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 DMAC2Q9NW81 257 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 JRKLQ9Y4A0 524 aa12.08□□□□□ -0.48
CUX1-212ENST00000547394 FOXN3O00409 490 aaPredicted RBP12.07□□□□□ -0.48
CUX1-212ENST00000547394 N4BP1O75113 896 aaKnown RBP12.07□□□□□ -0.48
CUX1-212ENST00000547394 DLATP10515 647 aaKnown RBP12.07□□□□□ -0.48
CUX1-212ENST00000547394 YBX3P16989 372 aaKnown RBP eCLIP12.07□□□□□ -0.483e-6■■■□□ 15.7
CUX1-212ENST00000547394 BMS1Q14692 1282 aaKnown RBP12.07□□□□□ -0.48
CUX1-212ENST00000547394 SEZ6Q53EL9 994 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 TAF3Q5VWG9 929 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 INPP4AQ96PE3 977 aaPredicted RBP12.07□□□□□ -0.48
CUX1-212ENST00000547394 ALS2CR12Q96Q35 445 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 FUT8Q9BYC5 575 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 UBE2TQ9NPD8 197 aaPredicted RBP12.07□□□□□ -0.48
CUX1-212ENST00000547394 SEL1LQ9UBV2 794 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 NAGPAQ9UK23 515 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 F8VZ95 297 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 MARK3P27448 753 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 KRT76Q01546 638 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 C1orf220Q5T0J3 134 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 STXBP4Q6ZWJ1 553 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 NIPA1Q7RTP0 329 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 SULF1Q8IWU6 871 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 C4orf19Q8IY42 314 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 LNX1Q8TBB1 728 aaPredicted RBP12.07□□□□□ -0.48
CUX1-212ENST00000547394 IQCDQ96DY2 449 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 ACCSQ96QU6 501 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 GPR88Q9GZN0 384 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 OSGEPQ9NPF4 335 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 PLCB1Q9NQ66 1216 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 SLC9A2Q9UBY0 812 aa12.07□□□□□ -0.48
CUX1-212ENST00000547394 GRID2IPA4D2P6 1211 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 ZSCAN5CA6NGD5 496 aaPredicted RBP12.06□□□□□ -0.48
CUX1-212ENST00000547394 PHACTR2O75167 634 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 VAMP7P51809 220 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 JAM2P57087 298 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 SUPT20HL1Q3ZLR7 823 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 TRIM50Q86XT4 487 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 TMEM161BQ8NDZ6 487 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 LRRC1Q9BTT6 524 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 PI4K2AQ9BTU6 479 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 EDEM3Q9BZQ6 932 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 KMT5AQ9NQR1 393 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 XPNPEP1Q9NQW7 623 aa12.06□□□□□ -0.48
CUX1-212ENST00000547394 DBR1Q9UK59 544 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms