RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 HGSO14964 777 aaPredicted RBP16.31■□□□□ 0.2
USP28-214ENST00000545540 HSPA9P38646 679 aaKnown RBP16.31■□□□□ 0.2
USP28-214ENST00000545540 SOX10P56693 466 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 AP3B2Q13367 1082 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 ZNF577Q9BSK1 485 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 VEZTQ9HBM0 779 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 H0YGN5 161 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 RGL2O15211 777 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 Q4G0T1 1027 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 TMEM179Q6ZVK1 233 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 ZDHHC15Q96MV8 337 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 LXNQ9BS40 222 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 GPR88Q9GZN0 384 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.31■□□□□ 0.2
USP28-214ENST00000545540 PNMA2Q9UL42 364 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 FRMD4BQ9Y2L6 1034 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 NFS1Q9Y697 457 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 HIP1RO75146 1068 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 CAND2O75155 1236 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 ZBTB48P10074 688 aaPredicted RBP16.31■□□□□ 0.2
USP28-214ENST00000545540 GUCY2CP25092 1073 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 TNFRSF8P28908 595 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 SLC20A2Q08357 652 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 HS2ST1Q7LGA3 356 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 ZNF720Q7Z2F6 126 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 OLIG1Q8TAK6 271 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 PBKQ96KB5 322 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 MBOAT7Q96N66 472 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 FAM118BQ9BPY3 351 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 GGT7Q9UJ14 662 aa16.31■□□□□ 0.2
USP28-214ENST00000545540 AFF2P51816 1311 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 EMSYQ7Z589 1322 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 K7ENM7 598 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 FTLP02792 175 aaPredicted RBP16.3■□□□□ 0.2
USP28-214ENST00000545540 MNAT1P51948 309 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 ADCY1Q08828 1119 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 ZC3H3Q8IXZ2 948 aaKnown RBP16.3■□□□□ 0.2
USP28-214ENST00000545540 ACTRT1Q8TDG2 376 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 BORCS6Q96GS4 357 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 AGBL1Q96MI9 1066 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 FAM20AQ96MK3 541 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 RAD17O75943 681 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 CYP3A4P08684 503 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 STAT2P52630 851 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 GTF2A1P52655 376 aaPredicted RBP16.3■□□□□ 0.2
USP28-214ENST00000545540 MYL7Q01449 175 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 SP4Q02446 784 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 PPP3CAQ08209 521 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 GRIPAP1Q4V328 841 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 MKL1Q969V6 931 aa16.3■□□□□ 0.2
USP28-214ENST00000545540 UTP11Q9Y3A2 253 aaKnown RBP16.3■□□□□ 0.2
USP28-214ENST00000545540 DACT2Q5SW24 774 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 LLGL2Q6P1M3 1020 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 KCNV1Q6PIU1 500 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 ZDHHC14Q8IZN3 488 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 IL31RAQ8NI17 732 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 SLC30A5Q8TAD4 765 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 FBXO25Q8TCJ0 367 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 FIZ1Q96SL8 496 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 SELENOSQ9BQE4 189 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 WDR11Q9BZH6 1224 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 METTL14Q9HCE5 456 aaKnown RBP16.29■□□□□ 0.2
USP28-214ENST00000545540 MLXIPLQ9NP71 852 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 STXBP5LQ9Y2K9 1186 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 BZW2Q9Y6E2 419 aaKnown RBP16.29■□□□□ 0.2
USP28-214ENST00000545540 FGFR4P22455 802 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 HNRNPH1P31943 449 aaKnown RBP16.29■□□□□ 0.2
USP28-214ENST00000545540 IFNAR2P48551 515 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 TMC3Q7Z5M5 1100 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 SAAL1Q96ER3 474 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 ALG6Q9Y672 507 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 PPP1R12BO60237 982 aaPredicted RBP16.29■□□□□ 0.2
USP28-214ENST00000545540 CLSTN1O94985 981 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 FERP16591 822 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 ADRA2BP18089 450 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 SF3B2Q13435 895 aaKnown RBP16.29■□□□□ 0.2
USP28-214ENST00000545540 SNX1Q13596 522 aa16.29■□□□□ 0.2
USP28-214ENST00000545540 TRIP13Q15645 432 aaPredicted RBP16.29■□□□□ 0.2
USP28-214ENST00000545540 IFI16Q16666 785 aaKnown RBP16.29■□□□□ 0.2
USP28-214ENST00000545540 ARHGEF35A5YM69 484 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 SGPL1O95470 568 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 PRKCIP41743 596 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 DR1Q01658 176 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 DAW1Q8N136 415 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 HES6Q96HZ4 224 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 MTFR1LQ9H019 292 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 DDX3YO15523 660 aaKnown RBP16.28■□□□□ 0.2
USP28-214ENST00000545540 PSMD10O75832 226 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 VPS41P49754 854 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 IFI35P80217 286 aaPredicted RBP16.28■□□□□ 0.2
USP28-214ENST00000545540 MAP2K1Q02750 393 aaPredicted RBP16.28■□□□□ 0.2
USP28-214ENST00000545540 OTUD6AQ7L8S5 288 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 RPUSD2Q8IZ73 545 aaKnown RBP16.28■□□□□ 0.2
USP28-214ENST00000545540 PPM1KQ8N3J5 372 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 CYFIP2Q96F07 1278 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 NAP1L4Q99733 375 aaKnown RBP16.28■□□□□ 0.2
USP28-214ENST00000545540 TOPORSQ9NS56 1045 aaPredicted RBP16.28■□□□□ 0.2
USP28-214ENST00000545540 ANKRD63C9JTQ0 380 aa16.28■□□□□ 0.2
USP28-214ENST00000545540 MEFVO15553 781 aaPredicted RBP16.28■□□□□ 0.2
USP28-214ENST00000545540 NPR1P16066 1061 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms