RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 EOMESO95936 686 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 RPA1P27694 616 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 CTNNB1P35222 781 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 PRPHP41219 470 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 TECP42680 631 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 RAB27AP51159 221 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 POU5F1BQ06416 359 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 TFDP1Q14186 410 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 CSPP1Q1MSJ5 1256 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 TIGD5Q53EQ6 642 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 LARP1BQ659C4 914 aaKnown RBP13.16□□□□□ -0.3
HDAC4-216ENST00000544989 MICALL1Q8N3F8 863 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 GDPD5Q8WTR4 605 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 PPM1EQ8WY54 764 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 P2RX5Q93086 422 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 MRPL38Q96DV4 380 aaKnown RBP13.16□□□□□ -0.3
HDAC4-216ENST00000544989 SH2D3AQ9BRG2 576 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 TRAIPQ9BWF2 469 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 THEGQ9P2T0 379 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 DBR1Q9UK59 544 aaKnown RBP13.16□□□□□ -0.3
HDAC4-216ENST00000544989 COG5Q9UP83 839 aa13.16□□□□□ -0.3
HDAC4-216ENST00000544989 PRRC2BQ5JSZ5 2229 aaKnown RBP13.15□□□□□ -0.3
HDAC4-216ENST00000544989 A0A087WZ62 844 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 A0A0U1RQF3 1178 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 RFXAPO00287 272 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 MGEA5O60502 916 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 BMP15O95972 392 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 PHKA2P46019 1235 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 RARRES1P49788 294 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 NCBP1Q09161 790 aaKnown RBP13.15□□□□□ -0.3
HDAC4-216ENST00000544989 LAMTOR4Q0VGL1 99 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 DRP2Q13474 957 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 GPM6BQ13491 265 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 CUL4AQ13619 759 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 SKIV2LQ15477 1246 aaKnown RBP13.15□□□□□ -0.3
HDAC4-216ENST00000544989 CCDC85BQ15834 202 aaPredicted RBP13.15□□□□□ -0.3
HDAC4-216ENST00000544989 CATSPER4Q7RTX7 472 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 FERMT3Q86UX7 667 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 ABI1Q8IZP0 508 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 MCPH1Q8NEM0 835 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 PRPF31Q8WWY3 499 aaKnown RBP13.15□□□□□ -0.3
HDAC4-216ENST00000544989 NLRP4Q96MN2 994 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 FDXACB1Q9BRP7 624 aaPredicted RBP13.15□□□□□ -0.3
HDAC4-216ENST00000544989 TMEM117Q9H0C3 514 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 LRWD1Q9UFC0 647 aa13.15□□□□□ -0.3
HDAC4-216ENST00000544989 RALGAPA2Q2PPJ7 1873 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 NCK2O43639 380 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 AXLP30530 894 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 MRPS5P82675 430 aaKnown RBP13.14□□□□□ -0.31
HDAC4-216ENST00000544989 PTGDRQ13258 359 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 DTHD1Q6ZMT9 781 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 BRAPQ7Z569 592 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 CATSPER3Q86XQ3 398 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 ECHDC2Q86YB7 292 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 KCTD17Q8N5Z5 321 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 C4orf32Q8N8J7 132 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 PPP2R3CQ969Q6 453 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 TMEM143Q96AN5 459 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 INTS4Q96HW7 963 aaKnown RBP13.14□□□□□ -0.31
HDAC4-216ENST00000544989 NFKBIZQ9BYH8 718 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 IFT122Q9HBG6 1241 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 PCDHB12Q9Y5F1 795 aa13.14□□□□□ -0.31
HDAC4-216ENST00000544989 TBKBP1A7MCY6 615 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 SRGAP2CP0DJJ0 459 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 SPATA31C1P0DKV0 1188 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 CCT6AP40227 531 aaKnown RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 TOB1P50616 345 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 KRT79Q5XKE5 535 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 ARL6IP4Q66PJ3 421 aaKnown RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 TWF2Q6IBS0 349 aaKnown RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 SPRED2Q7Z698 418 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 IGSF22Q8N9C0 903 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 ZNF579Q8NAF0 562 aaKnown RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 RNF149Q8NC42 400 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 PIGOQ8TEQ8 1089 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 CCDC51Q96ER9 411 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 ZNF668Q96K58 619 aaPredicted RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 MRPL9Q9BYD2 267 aaKnown RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 PIN4Q9Y237 131 aaKnown RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 PCDHB6Q9Y5E3 794 aa13.13□□□□□ -0.31
HDAC4-216ENST00000544989 MRPL42Q9Y6G3 142 aaKnown RBP13.13□□□□□ -0.31
HDAC4-216ENST00000544989 MUC6Q6W4X9 2439 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 ARHGEF35A5YM69 484 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 ZBTB39O15060 712 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 SLC26A4O43511 780 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 ZNF623O75123 536 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 MED24O75448 989 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 ERLIN2O94905 339 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 LINC00271P0C7V0 271 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 LAG3P18627 525 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 ARL2P36404 184 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 PTENP60484 403 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 UBE3AQ05086 875 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 PAN2Q504Q3 1202 aaKnown RBP13.12□□□□□ -0.31
HDAC4-216ENST00000544989 SPOUT1Q5T280 376 aaKnown RBP13.12□□□□□ -0.31
HDAC4-216ENST00000544989 IFNLR1Q8IU57 520 aaPredicted RBP13.12□□□□□ -0.31
HDAC4-216ENST00000544989 LRRC43Q8N309 656 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 CNNM3Q8NE01 707 aa13.12□□□□□ -0.31
HDAC4-216ENST00000544989 HLA-CQ95604 372 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms