RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 FAM43BQ6ZT52 329 aaPredicted RBP15.26■□□□□ 0.03
LIMS1-215ENST00000544547 UBE2TQ9NPD8 197 aaPredicted RBP15.26■□□□□ 0.03
LIMS1-215ENST00000544547 GDF3Q9NR23 364 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 DNAJC12Q9UKB3 198 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 GLT8D2Q9H1C3 349 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 KDM3AQ9Y4C1 1321 aa15.26■□□□□ 0.03
LIMS1-215ENST00000544547 HSPA6P17066 643 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 MFSD14BQ5SR56 506 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 TEX9Q8N6V9 391 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 CCSER1Q9C0I3 900 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 PABPC3Q9H361 631 aaKnown RBP15.25■□□□□ 0.03
LIMS1-215ENST00000544547 PSTPIP2Q9H939 334 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 SAYSD1Q9NPB0 183 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 F8VZ95 297 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 HAUS5O94927 633 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 LMNAP02545 664 aaKnown RBP15.25■□□□□ 0.03
LIMS1-215ENST00000544547 PLS3P13797 630 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 SLC16A2P36021 539 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 BTDP43251 543 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 BRIP1Q9BX63 1249 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 SEMA4AQ9H3S1 761 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 MINPP1Q9UNW1 487 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 GINS2Q9Y248 185 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 C1orf167Q5SNV9 1468 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 PVALEFA0A1B0GWK0 134 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 PCP11498 1178 aaKnown RBP15.25■□□□□ 0.03
LIMS1-215ENST00000544547 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.25■□□□□ 0.03
LIMS1-215ENST00000544547 TTC17Q96AE7 1141 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 PCIF1Q9H4Z3 704 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 SMYD3Q9H7B4 428 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 ANGPTL2Q9UKU9 493 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 EPHB6O15197 1021 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 CFBP00751 764 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 DLATP10515 647 aaKnown RBP15.25■□□□□ 0.03
LIMS1-215ENST00000544547 GHRP10912 638 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 KCNMA1Q12791 1236 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 FAM178BQ8IXR5 827 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 C4orf33Q8N1A6 199 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 LARGE2Q8N3Y3 721 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 SLC35G2Q8TBE7 412 aa15.25■□□□□ 0.03
LIMS1-215ENST00000544547 SNRNP27Q8WVK2 155 aaKnown RBP15.25■□□□□ 0.03
LIMS1-215ENST00000544547 A1CFQ9NQ94 594 aaKnown RBP15.25■□□□□ 0.03
LIMS1-215ENST00000544547 OVOS2A0A0G2JMS6 1433 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 FAM187AA6NFU0 413 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 RFC1P35251 1148 aaPredicted RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 ITIH4Q14624 930 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 MEA1Q16626 185 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 OLFML2BQ68BL8 750 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 MAIP1Q8WWC4 291 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 PPARGC1AQ9UBK2 798 aaKnown RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 TRIM33Q9UPN9 1127 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 SLIT1O75093 1534 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 PNPLA7Q6ZV29 1317 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 DNAJC8O75937 253 aaPredicted RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 PSMC4P43686 418 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 MYL7Q01449 175 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 CCDC89Q8N998 374 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 PIGOQ8TEQ8 1089 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 TMEM237Q96Q45 408 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 NPHS2Q9NP85 383 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 THRAP3Q9Y2W1 955 aaKnown RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 PABPN1LA6NDY0 278 aaKnown RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 GSTA1P08263 222 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 MYCLP12524 364 aaPredicted RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 MAPK4P31152 587 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 MDH1BQ5I0G3 518 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 WDR44Q5JSH3 913 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 DCUN1D2Q6PH85 259 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 RNF207Q6ZRF8 634 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 SREK1Q8WXA9 508 aaKnown RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 EDEM3Q9BZQ6 932 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 UBN1Q9NPG3 1134 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 SRP68Q9UHB9 627 aaKnown RBP15.24■□□□□ 0.03
LIMS1-215ENST00000544547 C3P01024 1663 aa15.24■□□□□ 0.03
LIMS1-215ENST00000544547 NPHP3-ACAD11A0A0J9YXS1 232 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 TDP2O95551 362 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 CHRNA3P32297 505 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 CA8P35219 290 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 RFC5P40937 340 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 RNASELQ05823 741 aaKnown RBP15.23■□□□□ 0.03
LIMS1-215ENST00000544547 FAM182BQ5T319 152 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 FAM84BQ96KN1 310 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-215ENST00000544547 TXNDC16Q9P2K2 825 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 SYNGAP1Q96PV0 1343 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 DCDC2CA8MYV0 355 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 GOLGA8SH3BPF8 625 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 GOLGA8MH3BSY2 632 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 GOLGA8RI6L899 631 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 UCHL3P15374 230 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 SH3BGRP55822 239 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-215ENST00000544547 DRAP1Q14919 205 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-215ENST00000544547 C1orf146Q5VVC0 180 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 AGGF1Q8N302 714 aaeCLIP15.23■□□□□ 0.032e-8■■□□□ 12.2
LIMS1-215ENST00000544547 MORC4Q8TE76 937 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 SH3RF3Q8TEJ3 882 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-215ENST00000544547 DUSP9Q99956 384 aaKnown RBP15.23■□□□□ 0.03
LIMS1-215ENST00000544547 SEMA6BQ9H3T3 888 aa15.23■□□□□ 0.03
LIMS1-215ENST00000544547 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.23■□□□□ 0.03
LIMS1-215ENST00000544547 EPHB1P54762 984 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms