RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 DGAT1O75907 488 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 ADORA2AP29274 412 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 TERF2Q15554 542 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 RASAL3Q86YV0 1011 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 FBXO16Q8IX29 292 aaPredicted RBP15.67■□□□□ 0.1
VPS33A-209ENST00000544349 CEP112Q8N8E3 955 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 RETREG2Q8NC44 543 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 PCYT2Q99447 389 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 GBP3Q9H0R5 595 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 IKZF4Q9H2S9 585 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 ST6GALNAC4Q9H4F1 302 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 MLXIPQ9HAP2 919 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 HDAC6Q9UBN7 1215 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 ENC1O14682 589 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 PLEKP08567 350 aaPredicted RBP15.67■□□□□ 0.1
VPS33A-209ENST00000544349 NCKAP1LP55160 1127 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 PEX3P56589 373 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 FAM110CQ1W6H9 321 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 SEPT1Q8WYJ6 367 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 PCMTD1Q96MG8 357 aaPredicted RBP15.67■□□□□ 0.1
VPS33A-209ENST00000544349 LACRTQ9GZZ8 138 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 MYO1AQ9UBC5 1043 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 FAM184BQ9ULE4 1060 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 SIK3Q9Y2K2 1263 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.67■□□□□ 0.1
VPS33A-209ENST00000544349 IVNS1ABPQ9Y6Y0 642 aa15.67■□□□□ 0.1
VPS33A-209ENST00000544349 SLC16A3O15427 465 aaKnown RBP15.66■□□□□ 0.1
VPS33A-209ENST00000544349 AKAP3O75969 853 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 OATP04181 439 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 ATP1A1P05023 1023 aaKnown RBP15.66■□□□□ 0.1
VPS33A-209ENST00000544349 ZNF157P51786 506 aaPredicted RBP15.66■□□□□ 0.1
VPS33A-209ENST00000544349 ZBED6P86452 979 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 GTF2BQ00403 316 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 FIGNQ5HY92 759 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 CELF3Q5SZQ8 465 aaKnown RBP15.66■□□□□ 0.1
VPS33A-209ENST00000544349 CCDC62Q6P9F0 684 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 ARMCX2Q7L311 632 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 HS2ST1Q7LGA3 356 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 HAUS6Q7Z4H7 955 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 NOA1Q8NC60 698 aaKnown RBP15.66■□□□□ 0.1
VPS33A-209ENST00000544349 SLC17A8Q8NDX2 589 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 KIFAP3Q92845 792 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 TMEM206Q9H813 350 aa15.66■□□□□ 0.1
VPS33A-209ENST00000544349 NHEJ1Q9H9Q4 299 aaPredicted RBP15.66■□□□□ 0.1
VPS33A-209ENST00000544349 ZNF263O14978 683 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 TCF7P36402 384 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-209ENST00000544349 MTERF2Q49AM1 385 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 GPR142Q7Z601 462 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 SYCP3Q8IZU3 236 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 MCPH1Q8NEM0 835 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 GOLGA5Q8TBA6 731 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 AFAP1L1Q8TED9 768 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 C17orf75Q9HAS0 396 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 ATP6V0A4Q9HBG4 840 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 METTL14Q9HCE5 456 aaKnown RBP15.65■□□□□ 0.1
VPS33A-209ENST00000544349 XPNPEP1Q9NQW7 623 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 AGPAT3Q9NRZ7 376 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 ARMCX3Q9UH62 379 aaPredicted RBP15.65■□□□□ 0.1
VPS33A-209ENST00000544349 MYH10P35580 1976 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 SLC16A4O15374 487 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 EPB41P11171 864 aaKnown RBP15.65■□□□□ 0.1
VPS33A-209ENST00000544349 CASP4P49662 377 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 STAT5BP51692 787 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 CYP27A1Q02318 531 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 WHAMMP3Q1A5X7 153 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 CCDC122Q5T0U0 273 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 FAM160B1Q5W0V3 765 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 TRAPPC11Q7Z392 1133 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 SAPCD2Q86UD0 394 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 MSANTD4Q8NCY6 345 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 JAKMIP2Q96AA8 810 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 IQCDQ96DY2 449 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 ACCSQ96QU6 501 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 FUT8Q9BYC5 575 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 NIFKQ9BYG3 293 aaKnown RBP15.65■□□□□ 0.1
VPS33A-209ENST00000544349 UBXN6Q9BZV1 441 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 HAUS4Q9H6D7 363 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 PDGFCQ9NRA1 345 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 DMAC2Q9NW81 257 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 MYO6Q9UM54 1294 aa15.65■□□□□ 0.1
VPS33A-209ENST00000544349 MANSC4A6NHS7 340 aaPredicted RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 RHOXF2BP0C7M4 288 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 TXNP10599 105 aaKnown RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 NPTX2P47972 431 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 SMTNP53814 917 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 SOX10P56693 466 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 KCNMA1Q12791 1236 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 DMP1Q13316 513 aaPredicted RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 TTLL4Q14679 1199 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 HSDL1Q3SXM5 330 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 ZNF467Q7Z7K2 595 aaPredicted RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 CCDC155Q8N6L0 562 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 GPR20Q99678 358 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 RHOXF2Q9BQY4 288 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 NTPCRQ9BSD7 190 aaKnown RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 ARFGAP3Q9NP61 516 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 FAM207AQ9NSI2 230 aaPredicted RBP15.64■□□□□ 0.09
VPS33A-209ENST00000544349 DUSP10Q9Y6W6 482 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 A0A1W2PQJ5 194 aa15.64■□□□□ 0.09
VPS33A-209ENST00000544349 PSMC2P35998 433 aaKnown RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms