RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 SMAD2Q15796 467 aaKnown RBP17.51■□□□□ 0.39
VPS33A-206ENST00000542310 PLA2G4FQ68DD2 849 aa17.51■□□□□ 0.39
VPS33A-206ENST00000542310 ADGRD2Q7Z7M1 963 aa17.51■□□□□ 0.39
VPS33A-206ENST00000542310 ADHFE1Q8IWW8 467 aa17.51■□□□□ 0.39
VPS33A-206ENST00000542310 ZNF668Q96K58 619 aaPredicted RBP17.51■□□□□ 0.39
VPS33A-206ENST00000542310 MSLNLQ96KJ4 702 aa17.51■□□□□ 0.39
VPS33A-206ENST00000542310 LXNQ9BS40 222 aa17.51■□□□□ 0.39
VPS33A-206ENST00000542310 DHX33Q9H6R0 707 aaKnown RBP17.51■□□□□ 0.39
VPS33A-206ENST00000542310 SUCLA2Q9P2R7 463 aaPredicted RBP17.51■□□□□ 0.39
VPS33A-206ENST00000542310 CD207Q9UJ71 328 aa17.51■□□□□ 0.39
VPS33A-206ENST00000542310 A0A087WZ62 844 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 FSCN2O14926 492 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 MBTPS2O43462 519 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 CSPG5O95196 566 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 EYA4O95677 639 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 ATF7P17544 494 aaPredicted RBP17.5■□□□□ 0.39
VPS33A-206ENST00000542310 SSTR3P32745 418 aaPredicted RBP17.5■□□□□ 0.39
VPS33A-206ENST00000542310 GTF2F1P35269 517 aaKnown RBP eCLIP17.5■□□□□ 0.39
VPS33A-206ENST00000542310 NDUFV1P49821 464 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 RAB27AP51159 221 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 DLX2Q07687 328 aaPredicted RBP17.5■□□□□ 0.39
VPS33A-206ENST00000542310 NR5A1Q13285 461 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 EARS2Q5JPH6 523 aaKnown RBP17.5■□□□□ 0.39
VPS33A-206ENST00000542310 CLLU1OSQ5K130 101 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 RHPN2Q8IUC4 686 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 NECAB1Q8N987 351 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 MRPS27Q92552 414 aaKnown RBP17.5■□□□□ 0.39
VPS33A-206ENST00000542310 ZNF558Q96NG5 402 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 FDXACB1Q9BRP7 624 aaPredicted RBP17.5■□□□□ 0.39
VPS33A-206ENST00000542310 EPHX3Q9H6B9 360 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 HCSTQ9UBK5 93 aa17.5■□□□□ 0.39
VPS33A-206ENST00000542310 C19orf67A6NJJ6 358 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 LINC01565O15544 149 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 MARCH6O60337 910 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 GPR37L1O60883 481 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 FGFR4P22455 802 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 NRIP1P48552 1158 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 NEK4P51957 841 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 POLGP54098 1239 aaPredicted RBP17.49■□□□□ 0.39
VPS33A-206ENST00000542310 COASYQ13057 564 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 TRIM29Q14134 588 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 TMEM31Q5JXX7 168 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 LRRC55Q6ZSA7 311 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 SMRP1Q8NCR6 262 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 PSPC1Q8WXF1 523 aaKnown RBP17.49■□□□□ 0.39
VPS33A-206ENST00000542310 KHSRPQ92945 711 aaKnown RBP eCLIP17.49■□□□□ 0.39
VPS33A-206ENST00000542310 CEP170P1Q96L14 293 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 SH2D3AQ9BRG2 576 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 IGFLR1Q9H665 355 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 ZSWIM4Q9H7M6 989 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 WRAP73Q9P2S5 460 aaPredicted RBP17.49■□□□□ 0.39
VPS33A-206ENST00000542310 COL4A3BPQ9Y5P4 624 aa17.49■□□□□ 0.39
VPS33A-206ENST00000542310 C5orf42Q9H799 3197 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 FAM205CA6NFA0 338 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 GLP2RO95838 553 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 ALADP13716 330 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 YWHABP31946 246 aaKnown RBP17.48■□□□□ 0.39
VPS33A-206ENST00000542310 PHKA2P46019 1235 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 NCAPH2Q6IBW4 605 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 KCNT2Q6UVM3 1135 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 OTUD6AQ7L8S5 288 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 DIS3L2Q8IYB7 885 aaKnown RBP17.48■□□□□ 0.39
VPS33A-206ENST00000542310 TCP11Q8WWU5 503 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 NLRP4Q96MN2 994 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 TLE6Q9H808 572 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 AGPAT5Q9NUQ2 364 aa17.48■□□□□ 0.39
VPS33A-206ENST00000542310 PUF60Q9UHX1 559 aaKnown RBP17.48■□□□□ 0.39
VPS33A-206ENST00000542310 PIN4Q9Y237 131 aaKnown RBP17.48■□□□□ 0.39
VPS33A-206ENST00000542310 NEMFO60524 1076 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 LYPLA2O95372 231 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 SRGAP2BP0DMP2 458 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 NPEPPSP55786 919 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 EMC2Q15006 297 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 CALCRLQ16602 461 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 DUSP6Q16828 381 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 TWF2Q6IBS0 349 aaKnown RBP17.47■□□□□ 0.39
VPS33A-206ENST00000542310 CATSPER4Q7RTX7 472 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 SRGAP1Q7Z6B7 1085 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 RNF169Q8NCN4 708 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 HELQQ8TDG4 1101 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 IFT122Q9HBG6 1241 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 NGRNQ9NPE2 291 aaKnown RBP17.47■□□□□ 0.39
VPS33A-206ENST00000542310 FAM105AQ9NUU6 356 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 SPG21Q9NZD8 308 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 CLEC1BQ9P126 229 aa17.47■□□□□ 0.39
VPS33A-206ENST00000542310 ASAP2O43150 1006 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 JAK2O60674 1132 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 ZNF623O75123 536 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 CSDE1O75534 798 aaKnown RBP17.46■□□□□ 0.39
VPS33A-206ENST00000542310 ERVFC1P60507 584 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 KRT17Q04695 432 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 ST3GAL1Q11201 340 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 PCBP1Q15365 356 aaKnown RBP eCLIP17.46■□□□□ 0.39
VPS33A-206ENST00000542310 CLUL1Q15846 466 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 SLC39A11Q8N1S5 342 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 MICAL1Q8TDZ2 1067 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 DYDC2Q96IM9 177 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 TCF25Q9BQ70 676 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 LRFN3Q9BTN0 628 aa17.46■□□□□ 0.39
VPS33A-206ENST00000542310 C11orf16Q9NQ32 467 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms