RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 RIN2Q8WYP3 895 aaPredicted RBP12□□□□□ -0.49
CDH3-203ENST00000542274 FGD4Q96M96 766 aa12□□□□□ -0.49
CDH3-203ENST00000542274 SENP7Q9BQF6 1050 aa12□□□□□ -0.49
CDH3-203ENST00000542274 GLT8D2Q9H1C3 349 aa12□□□□□ -0.49
CDH3-203ENST00000542274 VAT1LQ9HCJ6 419 aa12□□□□□ -0.49
CDH3-203ENST00000542274 C10orf76Q5T2E6 689 aa12□□□□□ -0.49
CDH3-203ENST00000542274 KCTD16Q68DU8 428 aa12□□□□□ -0.49
CDH3-203ENST00000542274 CDC42EP5Q6NZY7 148 aa12□□□□□ -0.49
CDH3-203ENST00000542274 DUS1LQ6P1R4 473 aaKnown RBP12□□□□□ -0.49
CDH3-203ENST00000542274 SMYD4Q8IYR2 804 aaPredicted RBP12□□□□□ -0.49
CDH3-203ENST00000542274 USP6NLQ92738 828 aa12□□□□□ -0.49
CDH3-203ENST00000542274 KIFAP3Q92845 792 aa12□□□□□ -0.49
CDH3-203ENST00000542274 CEP95Q96GE4 821 aa12□□□□□ -0.49
CDH3-203ENST00000542274 MED15Q96RN5 788 aa12□□□□□ -0.49
CDH3-203ENST00000542274 MTFR1LQ9H019 292 aa12□□□□□ -0.49
CDH3-203ENST00000542274 FANCLQ9NW38 375 aa12□□□□□ -0.49
CDH3-203ENST00000542274 DCAF16Q9NXF7 216 aa12□□□□□ -0.49
CDH3-203ENST00000542274 GJA3Q9Y6H8 435 aa12□□□□□ -0.49
CDH3-203ENST00000542274 RPL17P18621 184 aaKnown RBP11.99□□□□□ -0.49
CDH3-203ENST00000542274 SUZ12Q15022 739 aaKnown RBP11.99□□□□□ -0.49
CDH3-203ENST00000542274 C6orf183Q5T699 404 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 STRIP1Q5VSL9 837 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 APOBEC3HQ6NTF7 200 aaKnown RBP11.99□□□□□ -0.49
CDH3-203ENST00000542274 TAOK1Q7L7X3 1001 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 HEATR3Q7Z4Q2 680 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 LARGE2Q8N3Y3 721 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 ANKRD49Q8WVL7 239 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 UPF1Q92900 1129 aaKnown RBP eCLIP11.99□□□□□ -0.49
CDH3-203ENST00000542274 KIAA1522Q9P206 1035 aaPredicted RBP11.99□□□□□ -0.49
CDH3-203ENST00000542274 TBK1Q9UHD2 729 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 SLC45A1Q9Y2W3 748 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 MYH8P13535 1937 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 USO1O60763 962 aaKnown RBP11.99□□□□□ -0.49
CDH3-203ENST00000542274 PLCG2P16885 1265 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 S100A5P33763 92 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 TCP10Q12799 353 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 DGKHQ86XP1 1220 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 ZFPM1Q8IX07 1006 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 C7orf57Q8NEG2 295 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 TNIP2Q8NFZ5 429 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 ABTB1Q969K4 478 aaPredicted RBP11.99□□□□□ -0.49
CDH3-203ENST00000542274 MOV10L1Q9BXT6 1211 aaKnown RBP11.99□□□□□ -0.49
CDH3-203ENST00000542274 NDEL1Q9GZM8 345 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 ZSWIM4Q9H7M6 989 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 PLCB1Q9NQ66 1216 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 DAAM1Q9Y4D1 1078 aa11.99□□□□□ -0.49
CDH3-203ENST00000542274 ROBO3Q96MS0 1386 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 FAM196BA6NMK8 535 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 POTEB2H3BUK9 544 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 FANCCQ00597 558 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 BCL2A1Q16548 175 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 RNF220Q5VTB9 566 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 CDK5RAP3Q96JB5 506 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 C1orf74Q96LT6 269 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 MTUS1Q9ULD2 1270 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 ARIH1Q9Y4X5 557 aaPredicted RBP11.98□□□□□ -0.49
CDH3-203ENST00000542274 FRMPD2Q68DX3 1309 aaPredicted RBP11.98□□□□□ -0.49
CDH3-203ENST00000542274 PP2D1A8MPX8 630 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 SARSP49591 514 aaKnown RBP11.98□□□□□ -0.49
CDH3-203ENST00000542274 PAK2Q13177 524 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 XRCC4Q13426 336 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 GRM4Q14833 912 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 BOLA3Q53S33 107 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 C10orf62Q5T681 223 aaPredicted RBP11.98□□□□□ -0.49
CDH3-203ENST00000542274 ALKBH2Q6NS38 261 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 C16orf86Q6ZW13 317 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 PPFIBP1Q86W92 1011 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 FAM20CQ8IXL6 584 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 LRRC47Q8N1G4 583 aaKnown RBP11.98□□□□□ -0.49
CDH3-203ENST00000542274 CCHCR1Q8TD31 782 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 C8orf48Q96LL4 319 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 BPIFA3Q9BQP9 254 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 BLZF1Q9H2G9 400 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 PIM2Q9P1W9 311 aa11.98□□□□□ -0.49
CDH3-203ENST00000542274 ABLIM1O14639 778 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 ELF3P78545 371 aaPredicted RBP11.97□□□□□ -0.49
CDH3-203ENST00000542274 SULT2A1Q06520 285 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 ZNF365Q70YC5 407 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 NDUFAF2Q8N183 169 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 RNF10Q8N5U6 811 aaKnown RBP11.97□□□□□ -0.49
CDH3-203ENST00000542274 GIPC2Q8TF65 315 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 L3MBTL3Q96JM7 780 aaPredicted RBP11.97□□□□□ -0.49
CDH3-203ENST00000542274 UROC1Q96N76 676 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 SYT15Q9BQS2 421 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 TPK1Q9H3S4 243 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 BRCA1P38398 1863 aaKnown RBP11.97□□□□□ -0.49
CDH3-203ENST00000542274 USP17L5A8MUK1 530 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 KLRF2D3W0D1 207 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 GLULP15104 373 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 STX17P56962 302 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 MRPS35P82673 323 aaKnown RBP11.97□□□□□ -0.49
CDH3-203ENST00000542274 COX10Q12887 443 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 ARMCX5Q6P1M9 558 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 BLIDQ8IZY5 108 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 SUPT20HQ8NEM7 779 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 ACMSDQ8TDX5 336 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 PLIN2Q99541 437 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 ARHGEF38Q9NXL2 777 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 ZNF148Q9UQR1 794 aa11.97□□□□□ -0.49
CDH3-203ENST00000542274 PSMD14O00487 310 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms