RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 SETQ01105 290 aaPredicted RBP9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 GUCY1B3Q02153 619 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 NR5A1Q13285 461 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 BECN1Q14457 450 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 ODR4Q5SWX8 454 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 LARP1BQ659C4 914 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 PIK3AP1Q6ZUJ8 805 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 SLC24A5Q71RS6 500 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 TRMT1LQ7Z2T5 733 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 UBALD2Q8IYN6 164 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 ADSSL1Q8N142 457 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 NME8Q8N427 588 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 TMEM87AQ8NBN3 555 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 FLCNQ8NFG4 579 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 CASP10Q92851 521 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 NAP1L4Q99733 375 aaKnown RBP9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 SDF4Q9BRK5 362 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 POMKQ9H5K3 350 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 CWH43Q9H720 699 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 CDHR5Q9HBB8 845 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 ERVK-5Q9HDB9 667 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 RGS18Q9NS28 235 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 C1orf112Q9NSG2 853 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 ST3GAL5Q9UNP4 418 aa9.79□□□□□ -0.84
CLSTN3-212ENST00000541770 MYH9P35579 1960 aaKnown RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 FAM86B1E9PN63 330 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 H3BQV1 296 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 BACH1O14867 736 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 GPR182O15218 404 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 HSP90AA1P07900 732 aaKnown RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 FAM86B2P0C5J1 330 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 GCFC2P16383 781 aaKnown RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 HOXB8P17481 243 aaPredicted RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 ZNF76P36508 570 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 ACTR2P61160 394 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 KRT17Q04695 432 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 INF2Q27J81 1249 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 TPRNQ4KMQ1 711 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 EARS2Q5JPH6 523 aaKnown RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 RARS2Q5T160 578 aaKnown RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 ASTLQ6HA08 431 aaPredicted RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 PPP4R3AQ6IN85 833 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 KCNT2Q6UVM3 1135 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 TMEM184AQ6ZMB5 413 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 NEK8Q86SG6 692 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 NOSTRINQ8IVI9 506 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 ABI1Q8IZP0 508 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 RNF169Q8NCN4 708 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 CYP2W1Q8TAV3 490 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 TMEM40Q8WWA1 233 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 MBOAT7Q96N66 472 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 ZNF558Q96NG5 402 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 OSMRQ99650 979 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 NGRNQ9NPE2 291 aaKnown RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 KCNH7Q9NS40 1196 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 TMEM161AQ9NX61 479 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 LIMD1Q9UGP4 676 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 DBR1Q9UK59 544 aaKnown RBP9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 HCFC2Q9Y5Z7 792 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 KDM3AQ9Y4C1 1321 aa9.78□□□□□ -0.84
CLSTN3-212ENST00000541770 SPDYE4A6NLX3 237 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 C9IYK1 514 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 SYT1P21579 422 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 PLCB3Q01970 1234 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 GNL2Q13823 731 aaKnown RBP9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 KCNC3Q14003 757 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 SMC1AQ14683 1233 aaKnown RBP9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 KIZQ2M2Z5 673 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 Q4G0T1 1027 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 PLPPR4Q7Z2D5 763 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 ERMP1Q7Z2K6 904 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 PLA2G4DQ86XP0 818 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 CKAP2LQ8IYA6 745 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 C12orf76Q8N812 135 aaPredicted RBP9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 TDRD5Q8NAT2 981 aaKnown RBP9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 KCNG4Q8TDN1 519 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 LENG9Q96B70 501 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 NECTIN4Q96NY8 510 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 ADAM7Q9H2U9 754 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 AGO4Q9HCK5 861 aaKnown RBP9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 LZTS1Q9Y250 596 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 NFASCO94856 1347 aa9.77□□□□□ -0.85
CLSTN3-212ENST00000541770 FAM205CA6NFA0 338 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 NT5C1B-RDH14C9J2C7 533 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 STK25O00506 426 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 HBP1O60381 514 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 VTNP04004 478 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 ARP10275 920 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 ZSCAN20P17040 1043 aaPredicted RBP9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 PPM1AP35813 382 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 MTHFRP42898 656 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 TRAPPC10P48553 1259 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 ITIH3Q06033 890 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 ORC2Q13416 577 aaPredicted RBP9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 BMS1Q14692 1282 aaKnown RBP9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 LETM2Q2VYF4 491 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 PRR16Q569H4 304 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 FAM160B1Q5W0V3 765 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 KANK3Q6NY19 840 aa9.76□□□□□ -0.85
CLSTN3-212ENST00000541770 LRRC55Q6ZSA7 311 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms