RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 CMTR2Q8IYT2 770 aaKnown RBP14.59□□□□□ -0.07
LTBR-208ENST00000541005 MCPH1Q8NEM0 835 aa14.59□□□□□ -0.07
LTBR-208ENST00000541005 ZNF668Q96K58 619 aaPredicted RBP14.59□□□□□ -0.07
LTBR-208ENST00000541005 TRAIPQ9BWF2 469 aa14.59□□□□□ -0.07
LTBR-208ENST00000541005 ELAC1Q9H777 363 aaKnown RBP14.59□□□□□ -0.07
LTBR-208ENST00000541005 CHST12Q9NRB3 414 aa14.59□□□□□ -0.07
LTBR-208ENST00000541005 MTMR6Q9Y217 621 aa14.59□□□□□ -0.07
LTBR-208ENST00000541005 TCHHQ07283 1943 aa14.58□□□□□ -0.07
LTBR-208ENST00000541005 SLC26A4O43511 780 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 PCBP1Q15365 356 aaKnown RBP eCLIP14.58□□□□□ -0.08
LTBR-208ENST00000541005 HYIQ5T013 277 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 SRGAP1Q7Z6B7 1085 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 KCTD17Q8N5Z5 321 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 MAFAQ8NHW3 353 aaPredicted RBP14.58□□□□□ -0.08
LTBR-208ENST00000541005 SNX29Q8TEQ0 813 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 ARNTL2Q8WYA1 636 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 CLP1Q92989 425 aaKnown RBP14.58□□□□□ -0.08
LTBR-208ENST00000541005 MMTAG2Q9BU76 263 aaKnown RBP14.58□□□□□ -0.08
LTBR-208ENST00000541005 NFKBIZQ9BYH8 718 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 BMP2KQ9NSY1 1161 aaPredicted RBP14.58□□□□□ -0.08
LTBR-208ENST00000541005 TMEM161AQ9NX61 479 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 DACT1Q9NYF0 836 aa14.58□□□□□ -0.08
LTBR-208ENST00000541005 TRIP11Q15643 1979 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 STX6O43752 255 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 LPXNO60711 386 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 USO1O60763 962 aaKnown RBP14.57□□□□□ -0.08
LTBR-208ENST00000541005 PDIA4P13667 645 aaKnown RBP14.57□□□□□ -0.08
LTBR-208ENST00000541005 ZSCAN20P17040 1043 aaPredicted RBP14.57□□□□□ -0.08
LTBR-208ENST00000541005 PHKA2P46019 1235 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 PTENP60484 403 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 TFDP1Q14186 410 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 KRT79Q5XKE5 535 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 RNF149Q8NC42 400 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 ASAP3Q8TDY4 903 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 AK8Q96MA6 479 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 POLR3FQ9H1D9 316 aaPredicted RBP14.57□□□□□ -0.08
LTBR-208ENST00000541005 CERS4Q9HA82 394 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 AGPAT5Q9NUQ2 364 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 KIAA1024Q9UPX6 916 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 RWDD3Q9Y3V2 267 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 PCDHB7Q9Y5E2 793 aa14.57□□□□□ -0.08
LTBR-208ENST00000541005 MORC2Q9Y6X9 1032 aaPredicted RBP14.57□□□□□ -0.08
LTBR-208ENST00000541005 NCOR1O75376 2440 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 A0A087WWV3 80 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 A0A0U1RQF3 1178 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 ARHGEF35A5YM69 484 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 VWA3AA6NCI4 1184 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 PP2D1A8MPX8 630 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 C5orf67F2Z3F1 127 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 CSDE1O75534 798 aaKnown RBP14.56□□□□□ -0.08
LTBR-208ENST00000541005 SRGAP2CP0DJJ0 459 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 CYP11B2P19099 503 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 FGFR4P22455 802 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 GLRA2P23416 452 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 GRB10Q13322 594 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 CAPSQ13938 189 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 PADI6Q6TGC4 694 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 ZNF598Q86UK7 904 aaKnown RBP14.56□□□□□ -0.08
LTBR-208ENST00000541005 FIBCD1Q8N539 461 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 C17orf80Q9BSJ5 609 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 ZSCAN16Q9H4T2 348 aaPredicted RBP14.56□□□□□ -0.08
LTBR-208ENST00000541005 MINDY3Q9H8M7 445 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 FOXD4L1Q9NU39 408 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 DDX19AQ9NUU7 478 aaKnown RBP14.56□□□□□ -0.08
LTBR-208ENST00000541005 LMCD1Q9NZU5 365 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 LRFN2Q9ULH4 789 aa14.56□□□□□ -0.08
LTBR-208ENST00000541005 CITO14578 2027 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 HOXA2O43364 376 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 EYA4O95677 639 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 ATF7P17544 494 aaPredicted RBP14.55□□□□□ -0.08
LTBR-208ENST00000541005 BTG3Q14201 252 aaPredicted RBP14.55□□□□□ -0.08
LTBR-208ENST00000541005 PTPAQ15257 358 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 SF3A1Q15459 793 aaKnown RBP14.55□□□□□ -0.08
LTBR-208ENST00000541005 EPC2Q52LR7 807 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 CATSPER4Q7RTX7 472 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 ECHDC2Q86YB7 292 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 TMEM192Q8IY95 271 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 FBXO22Q8NEZ5 403 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 GDPD5Q8WTR4 605 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 RSPH1Q8WYR4 309 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 BHMT2Q9H2M3 363 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 RNF19AQ9NV58 838 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 PIN4Q9Y237 131 aaKnown RBP14.55□□□□□ -0.08
LTBR-208ENST00000541005 MTCH2Q9Y6C9 303 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 MRPL42Q9Y6G3 142 aaKnown RBP14.55□□□□□ -0.08
LTBR-208ENST00000541005 EYSQ5T1H1 3165 aa14.55□□□□□ -0.08
LTBR-208ENST00000541005 RFXAPO00287 272 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 EOMESO95936 686 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 RB1P06400 928 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 CDC25AP30304 524 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 LONP1P36776 959 aaKnown RBP14.54□□□□□ -0.08
LTBR-208ENST00000541005 RAB27AP51159 221 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 MBTD1Q05BQ5 628 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 TMEM119Q4V9L6 283 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 CDCA2Q69YH5 1023 aaPredicted RBP14.54□□□□□ -0.08
LTBR-208ENST00000541005 PNMA5Q96PV4 448 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 PLVAPQ9BX97 442 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 NT5C3AQ9H0P0 336 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 GPRC5CQ9NQ84 441 aa14.54□□□□□ -0.08
LTBR-208ENST00000541005 MTUS1Q9ULD2 1270 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms