RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 IGSF10Q6WRI0 2623 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 LOC400499M0QZD8 3231 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 MYH7BA7E2Y1 1941 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 BAZ2AQ9UIF9 1905 aaKnown RBP9.35□□□□□ -0.91
CHD4-208ENST00000540960 A6NJR5 290 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 PTMAP06454 111 aaKnown RBP9.35□□□□□ -0.91
CHD4-208ENST00000540960 DCNP07585 359 aaKnown RBP9.35□□□□□ -0.91
CHD4-208ENST00000540960 SLFN14P0C7P3 912 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 UBA7P41226 1012 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 PPP1R2P41236 205 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 USP11P51784 963 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 NLRP12P59046 1061 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 AMPD3Q01432 767 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 IKQ13123 557 aaPredicted RBP9.35□□□□□ -0.91
CHD4-208ENST00000540960 PTGDRQ13258 359 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 TPRNQ4KMQ1 711 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 SHC4Q6S5L8 630 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 MOXD1Q6UVY6 613 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.35□□□□□ -0.91
CHD4-208ENST00000540960 HOMER1Q86YM7 354 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 CKAP2LQ8IYA6 745 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 ADGRF4Q8IZF3 695 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 LRRC47Q8N1G4 583 aaKnown RBP9.35□□□□□ -0.91
CHD4-208ENST00000540960 KDF1Q8NAX2 398 aaPredicted RBP9.35□□□□□ -0.91
CHD4-208ENST00000540960 MLKLQ8NB16 471 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 OXER1Q8TDS5 423 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 POF1BQ8WVV4 589 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 KAT2BQ92831 832 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 PPP2R3CQ969Q6 453 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 PIGSQ96S52 555 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 PSTPIP2Q9H939 334 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 RC3H2Q9HBD1 1191 aaKnown RBP9.35□□□□□ -0.91
CHD4-208ENST00000540960 VAT1LQ9HCJ6 419 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 GPCPD1Q9NPB8 672 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 HDAC6Q9UBN7 1215 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 FEM1BQ9UK73 627 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 PCDHA6Q9UN73 950 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 MTMR7Q9Y216 660 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 NR2E1Q9Y466 385 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 PCDHB6Q9Y5E3 794 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 PCDHA8Q9Y5H6 950 aa9.35□□□□□ -0.91
CHD4-208ENST00000540960 AKAP13Q12802 2813 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.34□□□□□ -0.91
CHD4-208ENST00000540960 M0R2N6 131 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 STK25O00506 426 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 IKBKBO14920 756 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 CYTH3O43739 400 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 DTNBO60941 627 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 WEE2P0C1S8 567 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 GOLGA8HP0CJ92 632 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 ATP2B1P20020 1258 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 TECP42680 631 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 KCNC3Q14003 757 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 ZNF174Q15697 407 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 NPY5RQ15761 445 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 ANO6Q4KMQ2 910 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 SYDE2Q5VT97 1194 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 PPP4R3AQ6IN85 833 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 ANKRD54Q6NXT1 300 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 UNQ6494/PRO21346Q6UXR6 183 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 SESTD1Q86VW0 696 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 KLHL23Q8NBE8 558 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 RNF214Q8ND24 703 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 SMARCE1Q969G3 411 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 PDLIM2Q96JY6 352 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 GSDMAQ96QA5 445 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 GOLPH3LQ9H4A5 285 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 JMJD4Q9H9V9 463 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 SLC38A10Q9HBR0 1119 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 VTA1Q9NP79 307 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 DLGAP2Q9P1A6 1054 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 FBXO40Q9UH90 709 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 TUBE1Q9UJT0 475 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 MRVI1Q9Y6F6 885 aa9.34□□□□□ -0.91
CHD4-208ENST00000540960 ADGRA3Q8IWK6 1321 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 ADAMTS20P59510 1910 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 hCG_1642624A0A1W2PR95 340 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 RBM47A0AV96 593 aaKnown RBP9.33□□□□□ -0.92
CHD4-208ENST00000540960 KRBA1A5PL33 1030 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 NRDCO43847 1150 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 MARCH6O60337 910 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 NEMFO60524 1076 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 ZBED4O75132 1171 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 OR52Z1P0C646 297 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 PRKCSHP14314 528 aaPredicted RBP9.33□□□□□ -0.92
CHD4-208ENST00000540960 MCM7P33993 719 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 STAT2P52630 851 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 PDIA5Q14554 519 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 POSTNQ15063 836 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 SARM1Q6SZW1 724 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 PRR23BQ6ZRT6 265 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 C1orf210Q8IVY1 113 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 PRPF38AQ8NAV1 312 aaKnown RBP9.33□□□□□ -0.92
CHD4-208ENST00000540960 RASSF8Q8NHQ8 419 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 FEZF2Q8TBJ5 459 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 MORC4Q8TE76 937 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 PIBF1Q8WXW3 757 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 GPKOWQ92917 476 aaPredicted RBP eCLIP9.33□□□□□ -0.924e-6■□□□□ 10.4
CHD4-208ENST00000540960 KIFC2Q96AC6 838 aa9.33□□□□□ -0.92
CHD4-208ENST00000540960 CALML4Q96GE6 196 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms