RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 CCDC65Q8IXS2 484 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 ZNF710Q8N1W2 664 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 LRRC71Q8N4P6 559 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 C7orf31Q8N865 590 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 TMEM161BQ8NDZ6 487 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 PPP1R13LQ8WUF5 828 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 TMEM174Q8WUU8 243 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 TCP11Q8WWU5 503 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 PSPC1Q8WXF1 523 aaKnown RBP11.67□□□□□ -0.54
VPS33A-204ENST00000540669 DPF3Q92784 378 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 SMARCE1Q969G3 411 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 HVCN1Q96D96 273 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 TOX2Q96NM4 488 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 ADAMTS10Q9H324 1103 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 C11orf49Q9H6J7 331 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 FARP1Q9Y4F1 1045 aaPredicted RBP11.67□□□□□ -0.54
VPS33A-204ENST00000540669 COL4A3BPQ9Y5P4 624 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 NR2E3Q9Y5X4 410 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 RALGAPA2Q2PPJ7 1873 aa11.67□□□□□ -0.54
VPS33A-204ENST00000540669 EIF3DO15371 548 aaKnown RBP eCLIP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 B4GALT4O60513 344 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 TBCAO75347 108 aaKnown RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 GPR32O75388 356 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 PIGRP01833 764 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 EDN1P05305 212 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 GNAT1P11488 350 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 GPC3P51654 580 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 GTF2BQ00403 316 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 LAMTOR4Q0VGL1 99 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 PSMD2Q13200 908 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 PTK7Q13308 1070 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 MXD4Q14582 209 aaPredicted RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 AMHR2Q16671 573 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 DPCR1Q3MIW9 517 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 ZNF658Q5TYW1 1059 aaPredicted RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 EFCAB12Q6NXP0 572 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 ZNF410Q86VK4 478 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 MAP4K3Q8IVH8 894 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 ZC3H3Q8IXZ2 948 aaKnown RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 GUF1Q8N442 669 aaKnown RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 RETREG2Q8NC44 543 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 PRPF31Q8WWY3 499 aaKnown RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 TMEM143Q96AN5 459 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 CCDC43Q96MW1 224 aaKnown RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 MED15Q96RN5 788 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 GTPBP4Q9BZE4 634 aaKnown RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 IFT122Q9HBG6 1241 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 BMP2KQ9NSY1 1161 aaPredicted RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 PANK4Q9NVE7 773 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 RMND1Q9NWS8 449 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 LARSQ9P2J5 1176 aaKnown RBP11.66□□□□□ -0.54
VPS33A-204ENST00000540669 TBX21Q9UL17 535 aa11.66□□□□□ -0.54
VPS33A-204ENST00000540669 MROH7Q68CQ1 1323 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 PHLPP2Q6ZVD8 1323 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 PPP1R3GB7ZBB8 358 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 ASAP2O43150 1006 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 FAM13AO94988 1023 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 LETM1O95202 739 aaPredicted RBP11.65□□□□□ -0.54
VPS33A-204ENST00000540669 CYP2C9P11712 490 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 CD44P16070 742 aaKnown RBP11.65□□□□□ -0.54
VPS33A-204ENST00000540669 NUBP1P53384 320 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 PTENP60484 403 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 IGBP1P78318 339 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 RAD51AP2Q09MP3 1159 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 ALCAMQ13740 583 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 PPP2R5AQ15172 486 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 FAM187BQ17R55 369 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 SLC39A5Q6ZMH5 540 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 ZNF720Q7Z2F6 126 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 ADSSL1Q8N142 457 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 SLC17A8Q8NDX2 589 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 ZNF507Q8TCN5 953 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 SCFD1Q8WVM8 642 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 HPS3Q969F9 1004 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 SENP6Q9GZR1 1112 aaPredicted RBP11.65□□□□□ -0.54
VPS33A-204ENST00000540669 TRMT13Q9NUP7 481 aaKnown RBP11.65□□□□□ -0.54
VPS33A-204ENST00000540669 EXOC1Q9NV70 894 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 GDAQ9Y2T3 454 aa11.65□□□□□ -0.54
VPS33A-204ENST00000540669 TNRC18O15417 2968 aaPredicted RBP11.64□□□□□ -0.55
VPS33A-204ENST00000540669 SCN5AQ14524 2016 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 ANK1P16157 1881 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 SYCE3A1L190 88 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 SFI1A8K8P3 1242 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 ABLIM1O14639 778 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 EVI5O60447 810 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 NLRP12P59046 1061 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 MBTD1Q05BQ5 628 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 TYRO3Q06418 890 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 DMP1Q13316 513 aaPredicted RBP11.64□□□□□ -0.55
VPS33A-204ENST00000540669 MBTPS1Q14703 1052 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 PTGISQ16647 500 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 CT47A1Q5JQC4 288 aaPredicted RBP11.64□□□□□ -0.55
VPS33A-204ENST00000540669 ODR4Q5SWX8 454 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 FAM102BQ5T8I3 360 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 TRMT1LQ7Z2T5 733 aaKnown RBP11.64□□□□□ -0.55
VPS33A-204ENST00000540669 NME8Q8N427 588 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 TET1Q8NFU7 2136 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 PAWRQ96IZ0 340 aaKnown RBP11.64□□□□□ -0.55
VPS33A-204ENST00000540669 TRPV6Q9H1D0 765 aa11.64□□□□□ -0.55
VPS33A-204ENST00000540669 KCTD10Q9H3F6 313 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms