RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 GRID2IPA4D2P6 1211 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 ZBTB39O15060 712 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 PLA2G4AP47712 749 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 STXBP2Q15833 593 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 ZCWPW2Q504Y3 356 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 EMBQ6PCB8 327 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 COG1Q8WTW3 980 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 TRIM31Q9BZY9 425 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 ZNF446Q9NWS9 450 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 DAAM1Q9Y4D1 1078 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 MAST2Q6P0Q8 1798 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 EVI5O60447 810 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 VCAM1P19320 739 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 BEND6Q5SZJ8 279 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-213ENST00000540338 SCYL3Q8IZE3 742 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 UBLCP1Q8WVY7 318 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-213ENST00000540338 EXOC4Q96A65 974 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 LRRC1Q9BTT6 524 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 TEX13BQ9BXU2 312 aa11.68□□□□□ -0.54
CLIP1-213ENST00000540338 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.68□□□□□ -0.54
CLIP1-213ENST00000540338 RCCD1A6NED2 376 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 MAFGO15525 162 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 APBA1Q02410 837 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 MAP2K1Q02750 393 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 ANGEL2Q5VTE6 544 aaKnown RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 WDR93Q6P2C0 686 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 NIPA1Q7RTP0 329 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 CDAN1Q8IWY9 1227 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 RAB17Q9H0T7 212 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 HSPBP1Q9NZL4 362 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 FRMPD4Q14CM0 1322 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 GTPBP10A4D1E9 387 aaKnown RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 MARSP56192 900 aaKnown RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 LIN9Q5TKA1 542 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 PRAMEF18Q5VWM3 479 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 RHOT2Q8IXI1 618 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 MMGT1Q8N4V1 131 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 C7orf43Q8WVR3 580 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 SLC35C1Q96A29 364 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 ATP6V0A4Q9HBG4 840 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 AGO4Q9HCK5 861 aaKnown RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 ANKEF1Q9NU02 776 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 MTRF1LQ9UGC7 380 aaKnown RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 NAGPAQ9UK23 515 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 RAB21Q9UL25 225 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 RNF40O75150 1001 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 KIAA0754O94854 1291 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 ZSCAN20P17040 1043 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 BACE1P56817 501 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 JAG1P78504 1218 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 RRP1BQ14684 758 aaKnown RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 FAM160B1Q5W0V3 765 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 GJB7Q6PEY0 223 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 CCNI2Q6ZMN8 369 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-213ENST00000540338 ARFGAP2Q8N6H7 521 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 ADAM21Q9UKJ8 722 aa11.67□□□□□ -0.54
CLIP1-213ENST00000540338 ZNF233A6NK53 670 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 PJA2O43164 708 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 KCNA1Q09470 495 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 MESDQ14696 234 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 NBPF12Q5TAG4 269 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-213ENST00000540338 FAM81BQ96LP2 452 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 CAMKK2Q96RR4 588 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 FAM204AQ9H8W3 233 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 GOLGA8KD6RF30 607 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 ZRANB2O95218 330 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLIP1-213ENST00000540338 NPEPPSP55786 919 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 NAA35Q5VZE5 725 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 GSPT2Q8IYD1 628 aaKnown RBP11.66□□□□□ -0.54
CLIP1-213ENST00000540338 MS4A14Q96JA4 679 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 PDCD2LQ9BRP1 358 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 MOV10L1Q9BXT6 1211 aaKnown RBP11.66□□□□□ -0.54
CLIP1-213ENST00000540338 SLC9A2Q9UBY0 812 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 L1RE1Q9UN81 338 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 MYH1P12882 1939 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 CCDC188H7C350 402 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 KIF4AO95239 1232 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 GALCP54803 685 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 BPIFB4P59827 614 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 PLA2G4FQ68DD2 849 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 KRT39Q6A163 491 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 RDM1Q8NG50 284 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 ZKSCAN4Q969J2 545 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-213ENST00000540338 SAAL1Q96ER3 474 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 JPH1Q9HDC5 661 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-213ENST00000540338 FBXO40Q9UH90 709 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 RSPH14Q9UHP6 348 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 SNRPFP62306 86 aaKnown RBP11.66□□□□□ -0.54
CLIP1-213ENST00000540338 AMPD2Q01433 879 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 TRPC3Q13507 836 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 MYBPC2Q14324 1141 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 BMT2Q1RMZ1 405 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 ADAT2Q7Z6V5 191 aaKnown RBP11.66□□□□□ -0.54
CLIP1-213ENST00000540338 CCDC50Q8IVM0 306 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 RFFLQ8WZ73 363 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 RUBCNQ92622 972 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 LENG9Q96B70 501 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 AP1M1Q9BXS5 423 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 SUGCTQ9HAC7 445 aa11.66□□□□□ -0.54
CLIP1-213ENST00000540338 ZNF831Q5JPB2 1677 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms